|
ucsc-paranodestop
|
public |
Shut down parasol node daemons on a list of machines
|
2024-12-14 |
|
codingquarry
|
public |
CodingQuarry: highly accurate hidden Markov model gene prediction in fungal genomes using RNA-seq transcripts.
|
2024-12-14 |
|
rerconverge
|
public |
RERconverge is a set of software written in R that estimates the correlation between relative evolutionary rates of gene.
|
2024-12-14 |
|
fastool
|
public |
A simple and quick tool to read huge FastQ and FastA files (both normal and gzipped) and manipulate them.
|
2024-12-14 |
|
squigulator
|
public |
A tool for simulating nanopore raw signal data
|
2024-12-14 |
|
fqtk
|
public |
A toolkit for working with FASTQ files.
|
2024-12-14 |
|
fastq-scan
|
public |
FASTQ summary statistics in JSON format
|
2024-12-14 |
|
rustybam
|
public |
Mitchell Vollger's bioinformatics rust utilities.
|
2024-12-14 |
|
ucsc-pslxtofa
|
public |
convert pslx (with sequence) to fasta file
|
2024-12-14 |
|
genomeconstellation
|
public |
Fast, accurate and versatile k-mer based classification system
|
2024-12-14 |
|
mp-est
|
public |
Maximum Pseudo-likelihood Estimation of Species Trees
|
2024-12-14 |
|
ratatosk
|
public |
Hybrid error correction of long reads using colored de Bruijn graphs
|
2024-12-14 |
|
linearfold
|
public |
Linear-Time Prediction for RNA Secondary Structures
|
2024-12-14 |
|
niemagraphgen
|
public |
Niema's C++ implementations of graph generators
|
2024-12-14 |
|
fastobo
|
public |
Faultless AST for Open Biomedical Ontologies in Python
|
2024-12-14 |
|
kfoots
|
public |
The package provides methods for fitting multivariate count data with a mixture model or a hidden markov model. Each mixture component is a negative multivariate random variable and an EM algorithm is used to maximize the likelihood.
|
2024-12-14 |
|
gdc
|
public |
Utility designed for compression of genome collections from the same species.
|
2024-12-14 |
|
ucsc-maffrags
|
public |
Collect MAFs from regions specified in a 6 column bed file
|
2024-12-14 |
|
perl-want
|
public |
No Summary
|
2024-12-14 |
|
scrm
|
public |
A coalescent simulator for genome-scale sequences
|
2024-12-14 |
|
python-msgpack
|
public |
It's like JSON. But fast and small.
|
2024-12-14 |
|
rapifilt
|
public |
RAPIFILT:RAPId FILTer is a quality control of DNA sequences
|
2024-12-14 |
|
ucsc-netclass
|
public |
Add classification info to net
|
2024-12-14 |
|
perl-dbd-sqlite
|
public |
Self Contained RDBMS in a DBI Driver
|
2024-12-14 |
|
ucsc-qactowig
|
public |
convert from compressed quality score format to wiggle format.
|
2024-12-14 |
|
nextdenovo
|
public |
String graph-based de novo assembler for long reads (CLR, HiFi and ONT)
|
2024-12-14 |
|
bs_call
|
public |
DNA methylation and variant Caller for Bisulfite Sequencing Data.
|
2024-12-14 |
|
ucsc-autoxml
|
public |
Generate structures code and parser for XML file from DTD-like spec
|
2024-12-14 |
|
psdm
|
public |
Compute a pairwise SNP distance matrix from one or two alignment(s)
|
2024-12-14 |
|
strobemap
|
public |
Efficient string matching using strobemers
|
2024-12-14 |
|
kyototycoon
|
public |
a lightweight network server on top of the Kyoto Cabinet key-value database, built for high-performance and concurrency
|
2024-12-14 |
|
ucsc-autosql
|
public |
create SQL and C code for permanently storing
|
2024-12-14 |
|
r-scdc
|
public |
SCDC adopts an ENSEMBLE method to integrate deconvolution results from different scRNA-seq datasets that are produced in different laboratories and at different times, implicitly addressing the batch-effect confounding.
|
2024-12-14 |
|
ucsc-twobitinfo
|
public |
Get information about sequences in a .2bit file.
|
2024-12-14 |
|
ucsc-tdbquery
|
public |
Query the trackDb system using SQL syntax.
|
2024-12-14 |
|
r-sgtr
|
public |
Visualize population genomics analyses results in R.
|
2024-12-14 |
|
sword
|
public |
SWORD - a highly efficient protein database search
|
2024-12-14 |
|
r-tcr
|
public |
Platform for the advanced analysis of T cell receptor and Immunoglobulin repertoires data and visualisation of the analysis results.
|
2024-12-14 |
|
clonalframeml
|
public |
Efficient inferencing of recombination in bacterial genomes
|
2024-12-14 |
|
perl-scalar-util-numeric
|
public |
numeric tests for perl scalars
|
2024-12-14 |
|
ucsc-dbtrash
|
public |
drop tables from a database older than specified N hours
|
2024-12-14 |
|
msalign2
|
public |
Aligns 2 CE-MS or LC-MS datasets using accurate mass information.
|
2024-12-14 |
|
smafa
|
public |
smafa is a tool for querying and clustering pre-aligned small pre-aligned sequences.
|
2024-12-14 |
|
randfold
|
public |
No Summary
|
2024-12-14 |
|
srprism
|
public |
SRPRISM - Short Read Alignment Tool
|
2024-12-14 |
|
cloudspades
|
public |
A module of the SPAdes assembler aimed at genome assembly from linked read technologies (10x, Tellseq, Haplotagging).
|
2024-12-14 |
|
orna
|
public |
In silico read normalization
|
2024-12-14 |
|
slclust
|
public |
A utility that performs single-linkage clustering with the option of applying a Jaccard similarity coefficient to break weakly bound clusters into distinct clusters.
|
2024-12-14 |
|
mapseq
|
public |
Open source metagenomic 16S/18S read classifier enabling comparative metagenomics.
|
2024-12-14 |
|
ushuffle
|
public |
uShuffle---a useful tool for shuffling biological sequences while preserving the k-let counts
|
2024-12-14 |
