| Package Name | Access | Summary | Updated |
|---|---|---|---|
| esme_netcdf-fortran_mpich_4_2_3 | public | NetCDF-Fortran - netCDF interface for Fortran | 2025-04-22 |
| esme_netcdf-c_mpich_4_2_3 | public | NetCDF-C - netCDF interface for C | 2025-04-22 |
| adas | public | adas is a sequence database search engine for long sequences. It is an innovative application of Minimizer, MinHash, Coreset and Hierarchical Navigable Small World Graphs (HNSW) | 2025-04-22 |
| corona_lineage_dynamics | public | Analyzing and visualizing pangolin lineages of GISAID metadata. | 2025-04-22 |
| vpt-segmentation-packing | public | Packs cell boundaries for the Vizgen vzg2 file format | 2025-04-22 |
| muset | public | A pipeline for building an abundance unitig matrix from FASTA/FASTQ files | 2025-04-22 |
| ctyper | public | Genotyping sequence-resolved copy-number variation using pangenomes. | 2025-04-22 |
| spp-dcj | public | A tool for solving the small parsimony problem for natural genomes | 2025-04-22 |
| a3partitioner | public | A bioinformatics tool for creating APOBEC3 and non-APOBEC3 partitions | 2025-04-22 |
| pb-cpg-tools | public | Collection of tools for the analysis of CpG data | 2025-04-22 |
| get_pangenes | public | A versatile software package for calling pangenes from whole genome alignments | 2025-04-22 |
| frag_gene_scan_rs | public | Rust implementation of the gene prediction model for short and error-prone reads | 2025-04-22 |
| autobigs-cli | public | A CLI tool to rapidly fetch fetch MLST profiles given sequences for various diseases. | 2025-04-22 |
| autobigs-engine | public | A library to rapidly fetch fetch MLST profiles given sequences for various diseases. | 2025-04-22 |
| nafcodec | public | PyO3 bindings and Python interface to nafcodec, an encoder/decoder for Nucleotide Archive Format (NAF) files. | 2025-04-22 |
| kbo-cli | public | Command-line interface for the kbo local aligner | 2025-04-22 |
| grepq | public | Quickly filter FASTQ files. | 2025-04-22 |
| eastr | public | Tool for emending alignments of spuriously spliced transcript reads. | 2025-04-22 |
| linkedsv | public | A novel structural variant caller for 10X Genomics (linked-read) sequencing data | 2025-04-22 |
| ourotools | public | A comprehensive toolkit for quality control and analysis of single-cell long-read RNA-seq data | 2025-04-22 |
| biobb_morph | public | biobb_morph is the Biobb module collection to perform molecular dynamics simulations using the morph MD suite. | 2025-04-22 |
| qimba | public | Toolkit for metabarcoding analyses | 2025-04-22 |
| geomloss | public | Geometric loss functions between point clouds, images and volumes. | 2025-04-22 |
| memopair | public | A package for identifying methylated motif pairs | 2025-04-22 |
| snakebids | public | BIDS integration into snakemake workflows | 2025-04-22 |
