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bioconductor-igc
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public |
An integrated analysis package of Gene expression and Copy number alteration
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2024-12-14 |
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bioconductor-clusterjudge
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public |
Judging Quality of Clustering Methods using Mutual Information
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2024-12-14 |
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grabix
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public |
a wee tool for random access into BGZF files.
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2024-12-14 |
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bioconductor-semisup
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public |
Semi-Supervised Mixture Model
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2024-12-14 |
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bioconductor-ntw
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public |
Predict gene network using an Ordinary Differential Equation (ODE) based method
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2024-12-14 |
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bioconductor-synergyfinder
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public |
Calculate and Visualize Synergy Scores for Drug Combinations
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2024-12-14 |
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idba
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public |
IDBA-UD is a iterative De Bruijn Graph De Novo Assembler for Short Reads Sequencing data with Highly Uneven Sequencing Depth.
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2024-12-14 |
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ngs-disambiguate
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public |
Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem
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2024-12-14 |
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bioconductor-consensus
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public |
Cross-platform consensus analysis of genomic measurements via interlaboratory testing method
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2024-12-14 |
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bioconductor-shiny.gosling
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public |
A Grammar-based Toolkit for Scalable and Interactive Genomics Data Visualization for R and Shiny
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2024-12-14 |
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idemuxcpp
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public |
A Lexogen tool for demultiplexing and index error correcting fastq files. Works with Lexogen i7, i5 and i1 barcodes.
|
2024-12-14 |
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bioconductor-smad
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public |
Statistical Modelling of AP-MS Data (SMAD)
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2024-12-14 |
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bioconductor-rnaseqpower
|
public |
Sample size for RNAseq studies
|
2024-12-14 |
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bioconductor-gpls
|
public |
Classification using generalized partial least squares
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2024-12-14 |
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scalpel
|
public |
Sensitive detection of INDELs (INsertions and DELetions)
|
2024-12-14 |
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bioconductor-metahdep
|
public |
Hierarchical Dependence in Meta-Analysis
|
2024-12-14 |
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bioconductor-mantelcorr
|
public |
Compute Mantel Cluster Correlations
|
2024-12-14 |
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bioconductor-bridgedbr
|
public |
Code for using BridgeDb identifier mapping framework from within R
|
2024-12-14 |
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bioconductor-bg2
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public |
Performs Bayesian GWAS analysis for non-Gaussian data using BG2
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2024-12-14 |
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covtobed
|
public |
covtobed - generate a BED file of covered regions from a BAM file
|
2024-12-14 |
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bioconductor-geneticsped
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public |
Pedigree and genetic relationship functions
|
2024-12-14 |
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paml
|
public |
A package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood.
|
2024-12-14 |
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macs3
|
public |
Model Based Analysis for ChIP-Seq data.
|
2024-12-14 |
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bioconductor-sizepower
|
public |
Sample Size and Power Calculation in Micorarray Studies
|
2024-12-14 |
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tpmcalculator
|
public |
TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files.
|
2024-12-14 |
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ucsc-blasttopsl
|
public |
Convert blast alignments to PSLs.
|
2024-12-14 |
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bioconductor-empiricalbrownsmethod
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public |
Uses Brown's method to combine p-values from dependent tests
|
2024-12-14 |
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gem3-mapper
|
public |
The GEM read mapper (v3).
|
2024-12-14 |
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bioconductor-podcall
|
public |
Positive Droplet Calling for DNA Methylation Droplet Digital PCR
|
2024-12-14 |
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bioconductor-modcon
|
public |
Modifying splice site usage by changing the mRNP code, while maintaining the genetic code
|
2024-12-14 |
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bioconductor-compspot
|
public |
compSPOT: Tool for identifying and comparing significantly mutated genomic hotspots
|
2024-12-14 |
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bioconductor-flowgraph
|
public |
Identifying differential cell populations in flow cytometry data accounting for marker frequency
|
2024-12-14 |
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bioconductor-granulator
|
public |
Rapid benchmarking of methods for *in silico* deconvolution of bulk RNA-seq data
|
2024-12-14 |
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decifer
|
public |
DeCiFer simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell fractions (DCF)
|
2024-12-14 |
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ucsc-xmlcat
|
public |
Concatenate xml files together, stuffing all records inside a single outer tag.
|
2024-12-14 |
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bioconductor-macorrplot
|
public |
Visualize artificial correlation in microarray data
|
2024-12-14 |
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perl-indirect
|
public |
Lexically warn about using the indirect method call syntax.
|
2024-12-14 |
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bioconductor-treeio
|
public |
Base Classes and Functions for Phylogenetic Tree Input and Output
|
2024-12-14 |
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ucsc-splitfile
|
public |
Split up a file
|
2024-12-14 |
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bioconductor-agilp
|
public |
Agilent expression array processing package
|
2024-12-14 |
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bioconductor-specl
|
public |
specL - Prepare Peptide Spectrum Matches for Use in Targeted Proteomics
|
2024-12-14 |
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ggcat
|
public |
Compacted and colored de Bruijn graph construction and querying.
|
2024-12-14 |
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bioconductor-rmelting
|
public |
R Interface to MELTING 5
|
2024-12-14 |
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bioconductor-rimmport
|
public |
RImmPort: Enabling Ready-for-analysis Immunology Research Data
|
2024-12-14 |
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bioconductor-multimed
|
public |
Testing multiple biological mediators simultaneously
|
2024-12-14 |
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bioconductor-clustcomp
|
public |
Clustering Comparison Package
|
2024-12-14 |
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bioconductor-stringdb
|
public |
STRINGdb - Protein-Protein Interaction Networks and Functional Enrichment Analysis
|
2024-12-14 |
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bgreat
|
public |
BGREAT2 is a read mapping tool for NGS sequencing data that align reads on a de Bruijn graph. Preliminary version described at https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1103-9 and used in Bcool a short read corrector (https://arxiv.org/abs/1711.03336)
|
2024-12-14 |
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bioconductor-trajectorygeometry
|
public |
This Package Discovers Directionality in Time and Pseudo-times Series of Gene Expression Patterns
|
2024-12-14 |
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10x_bamtofastq
|
public |
Tool for converting 10x BAMs produced by Cell Ranger, Space Ranger, Cell Ranger ATAC, Cell Ranger DNA,
and Long Ranger back to FASTQ files that can be used as inputs to re-run analysis
|
2024-12-14 |
