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psirc
|
public |
Full-length linear and circular transcript isoform reconstruction and quantification.
|
2024-12-16 |
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bioconductor-nanotube
|
public |
An Easy Pipeline for NanoString nCounter Data Analysis
|
2024-12-16 |
|
wally
|
public |
Visualization of aligned sequencing reads and genomic variants.
|
2024-12-16 |
|
bioconductor-roastgsa
|
public |
Rotation based gene set analysis
|
2024-12-16 |
|
bioconductor-clippda
|
public |
A package for the clinical proteomic profiling data analysis
|
2024-12-16 |
|
r-aroma.core
|
public |
Core methods and classes used by higher-level 'aroma.*' packages part of the Aroma Project, e.g. 'aroma.affymetrix' and 'aroma.cn'.
|
2024-12-16 |
|
smartmap
|
public |
SmartMap: Bayesian Analysis of Ambiguously Mapped Reads
|
2024-12-16 |
|
bioconductor-cbpmanager
|
public |
Generate, manage, and edit data and metadata files suitable for the import in cBioPortal for Cancer Genomics
|
2024-12-16 |
|
bioconductor-hca
|
public |
Exploring the Human Cell Atlas Data Coordinating Platform
|
2024-12-16 |
|
bioconductor-snifter
|
public |
R wrapper for the python openTSNE library
|
2024-12-16 |
|
bioconductor-ihw
|
public |
Independent Hypothesis Weighting
|
2024-12-16 |
|
fastq-filter
|
public |
A fast FASTQ filter program.
|
2024-12-16 |
|
bpp-phyl
|
public |
Bio++ is a set of C++ libraries for Bioinformatics.
|
2024-12-16 |
|
ultraplex
|
public |
fastq demultiplexer
|
2024-12-16 |
|
cutadapt
|
public |
Trim adapters from high-throughput sequencing reads
|
2024-12-16 |
|
viewbs
|
public |
ViewBS is a powerful toolkit for visualization of high-throughput bisulfite sequencing data
|
2024-12-16 |
|
bioconductor-interactivedisplaybase
|
public |
Base package for enabling powerful shiny web displays of Bioconductor objects
|
2024-12-16 |
|
bpp-popgen
|
public |
Bio++ is a set of C++ libraries for Bioinformatics.
|
2024-12-16 |
|
perl-sanger-cgp-vagrent
|
public |
A toolset for comparing genomic variants to reference genome annotation to identify potential biological consequences.
|
2024-12-16 |
|
bioconductor-fenr
|
public |
Fast functional enrichment for interactive applications
|
2024-12-16 |
|
gmap
|
public |
Genomic mapping and alignment program for mRNA and EST sequences.
|
2024-12-16 |
|
biobambam
|
public |
Tools for early stage alignment file processing.
|
2024-12-16 |
|
bioconductor-ctdquerier
|
public |
Package for CTDbase data query, visualization and downstream analysis
|
2024-12-16 |
|
bioconductor-anvilworkflow
|
public |
Run workflows implemented in Terra/AnVIL workspace
|
2024-12-16 |
|
bioconductor-rpx
|
public |
R Interface to the ProteomeXchange Repository
|
2024-12-16 |
|
bioconductor-famagg
|
public |
Pedigree Analysis and Familial Aggregation
|
2024-12-16 |
|
bioconductor-anvilpublish
|
public |
Publish Packages and Other Resources to AnVIL Workspaces
|
2024-12-16 |
|
bioconductor-enmcb
|
public |
Predicting Disease Progression Based on Methylation Correlated Blocks using Ensemble Models
|
2024-12-16 |
|
bioconductor-ldblock
|
public |
data structures for linkage disequilibrium measures in populations
|
2024-12-16 |
|
dbg2olc
|
public |
Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing Technologies
|
2024-12-16 |
|
snvphyl-tools
|
public |
The SNVPhyl (Single Nucleotide Variant PHYLogenomics) pipeline is a pipeline for identifying
Single Nucleotide Variants (SNV) within a collection of microbial genomes and constructing a phylogenetic tree
|
2024-12-16 |
|
bioconductor-genproseq
|
public |
Generating Protein Sequences with Deep Generative Models
|
2024-12-16 |
|
addrg
|
public |
No Summary
|
2024-12-16 |
|
discosnp
|
public |
reference-free small variant caller for short read sequencing data
|
2024-12-16 |
|
bioconductor-browserviz
|
public |
BrowserViz: interactive R/browser graphics using websockets and JSON
|
2024-12-16 |
|
bioconductor-basilisk
|
public |
Freezing Python Dependencies Inside Bioconductor Packages
|
2024-12-16 |
|
ipk
|
public |
IPK is a tool for computing phylo-k-mers for a fixed phylogeny.
|
2024-12-16 |
|
perl-file-copy-recursive
|
public |
Perl extension for recursively copying files and directories
|
2024-12-16 |
|
bioconductor-methylmnm
|
public |
detect different methylation level (DMR)
|
2024-12-16 |
|
bioconductor-gcatest
|
public |
Genotype Conditional Association TEST
|
2024-12-16 |
|
orthanq
|
public |
Uncertainty aware HLA typing and general haplotype quantification
|
2024-12-16 |
|
artic-porechop
|
public |
Adapter removal and demultiplexing of Oxford Nanopore reads (fork of rrwick/Porechop)
|
2024-12-16 |
|
bioconductor-msstats
|
public |
Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics Experiments
|
2024-12-16 |
|
ucsc-fatovcf
|
public |
Extract VCF from a multi-sequence FASTA alignment.
|
2024-12-16 |
|
angsd
|
public |
ANGSD: Analysis of next generation Sequencing Data
|
2024-12-16 |
|
pangwes
|
public |
Performing pangenome-spanning epistasis and co-selection analysis via de Bruijn graphs
|
2024-12-16 |
|
metasnv
|
public |
SNV calling software
|
2024-12-16 |
|
ucsc-bedtobigbed
|
public |
Convert bed file to bigBed. (BigBed version: 4)
|
2024-12-16 |
|
aegean
|
public |
The AEGeAn Toolkit provides a bundle of software tools for evaluating gene structure annotations and genome organization. The software is implemented in C and Python.
|
2024-12-16 |
|
aletsch
|
public |
Aletsch is an accurate, versatile assembler for multiple RNA-seq samples.
|
2024-12-16 |
