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tracy
|
public |
Basecalling, alignment, assembly and deconvolution of Sanger chromatogram trace files
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2024-09-17 |
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vcflib
|
public |
Command-line tools for manipulating VCF files.
|
2024-09-17 |
|
medaka
|
public |
A tool to create consensus sequences and variant calls from nanopore sequencing data using neural networks.
|
2024-09-17 |
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hylight
|
public |
Strain aware assembly of low coverage metagenomes.
|
2024-09-17 |
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im2deep
|
public |
Framework for prediction of collisional cross-section of peptides.
|
2024-09-17 |
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transanno
|
public |
accurate VCF/GFF3/GTF LiftOver tool for new genome assemblies
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2024-09-17 |
|
biophi
|
public |
BioPhi open-source antibody design platform.
|
2024-09-17 |
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icfree-ml
|
public |
Design of experiments (DoE) and machine learning packages for the iCFree project
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2024-09-17 |
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fiji-omero_ij
|
public |
ImageJ / Fiji plugin to visualize and manipulate both image data and metadata maintained at an OMERO server site.
|
2024-09-17 |
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mirtop
|
public |
Small RNA-seq annotation.
|
2024-09-17 |
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cellprofiler-core
|
public |
Dependency for CellProfiler v4.
|
2024-09-17 |
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snp-pileup
|
public |
Compute SNP pileup at reference positions in one or more input bam files. Output is ready for the R package facets
|
2024-09-17 |
|
microhapulator
|
public |
Tools for empirical microhaplotype calling, forensic interpretation, and simulation.
|
2024-09-17 |
|
r-facets
|
public |
Cellular Fraction and Copy Numbers from Tumor Sequencing
|
2024-09-17 |
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pathphynder
|
public |
A workflow for ancient DNA placement into reference phylogenies.
|
2024-09-17 |
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cnv_facets
|
public |
Detect somatic copy number variants (CNV) in tumour-normal samples using next generation sequencing data
|
2024-09-17 |
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r-recetox-aplcms
|
public |
apLCMS is a software which generates a feature table from a batch of LC/MS spectra. A modified fork of the original apLCMS by Tianwei Yu.
|
2024-09-16 |
|
alfred
|
public |
BAM alignment statistics, feature counting and feature annotation
|
2024-09-16 |
|
hackgap
|
public |
hackgap (hash-based counting of k-mers with gaps) provides a fast jit-compiled k-kmer counter which supports gapped k-mers.
|
2024-09-16 |
|
vcf-validator
|
public |
EBI EVA - Validation tool to ensure VCF specification compliance
|
2024-09-16 |
|
dnaapler
|
public |
Reorients assembled microbial sequences
|
2024-09-16 |
|
bx-python
|
public |
Tools for manipulating biological data, particularly multiple sequence alignments
|
2024-09-16 |
|
pymsaviz
|
public |
MSA visualization python package for sequence analysis
|
2024-09-15 |
|
grenedalf
|
public |
Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments
|
2024-09-15 |
|
pronto
|
public |
Python frontend to ontologies
|
2024-09-15 |
|
dockq
|
public |
A Quality Measure for Protein, Nucleic Acids and Small Ligand Docking Modelsc
|
2024-09-14 |
|
zga
|
public |
Prokaryotic genome assembly and annotation pipeline
|
2024-09-13 |
|
cellxgene
|
public |
Web application for exploration of large scale scRNA-seq datasets
|
2024-09-13 |
|
bioutils
|
public |
miscellaneous simple bioinformatics utilities and lookup tables
|
2024-09-13 |
|
sawfish
|
public |
Structural variant discovery and genotyping from mapped PacBio HiFi data
|
2024-09-13 |
|
shasta
|
public |
De novo assembly from Oxford Nanopore reads.
|
2024-09-13 |
|
rbpbench
|
public |
Evaluate CLIP-seq and other genomic region data using a comprehensive collection of known RBP binding motifs
|
2024-09-13 |
|
mummer
|
public |
MUMmer is a system for rapidly aligning entire genomes
|
2024-09-13 |
|
bioconvert
|
public |
Convert between bioinformatics formats
|
2024-09-13 |
|
hhsuite
|
public |
HH-suite3 for fast remote homology detection and deep protein annotation
|
2024-09-13 |
|
usalign
|
public |
Universal structure alignment of monomeric, complex proteins and nucleic acids
|
2024-09-13 |
|
anglerfish
|
public |
Anglerfish, a tool to demultiplex Illumina libraries from ONT data
|
2024-09-13 |
|
auspice
|
public |
Auspice is an open-source interactive tool for visualising phylogenomic data
|
2024-09-13 |
|
gw
|
public |
View genomic sequencing data and vcf files
|
2024-09-12 |
|
micom
|
public |
Microbial community modeling based on cobrapy.
|
2024-09-12 |
|
irescue
|
public |
A tool to quantify transposable elements expression in scRNA-seq.
|
2024-09-12 |
|
bcftools
|
public |
BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed. Most commands accept VCF, bgzipped VCF and BCF with filetype detected automatically even when streaming from a pipe. Indexed VCF and BCF will work in all situations. Un-indexed VCF and BCF and streams will work in most, but not all situations.
|
2024-09-12 |
|
samtools
|
public |
Tools for dealing with SAM, BAM and CRAM files
|
2024-09-12 |
|
htslib
|
public |
C library for high-throughput sequencing data formats.
|
2024-09-12 |
|
dysgu
|
public |
A collection of tools for calling structural variants using short or long reads
|
2024-09-12 |
|
strainy
|
public |
assembly-based metagenomic strain phasing using long reads
|
2024-09-12 |
|
methylmap
|
public |
Plotting tool for population-scale nucleotide modifications
|
2024-09-12 |
|
checkqc
|
public |
A simple program to parse Illumina NGS data and check it for quality criteria.
|
2024-09-12 |
|
r-mfassignr
|
public |
The MFAssignR package was designed for multi-element molecular formula (MF)
assignment of ultrahigh resolution mass spectrometry measurements.
A number of tools for internal mass recalibration, MF assignment, signal-to-noise evaluation,
and unambiguous formula selections are provided.
|
2024-09-12 |
|
flumutdb
|
public |
Utility module for FluMut database.
|
2024-09-12 |
