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r-noisyr
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public |
Quantifies and removes technical noise from high-throughput sequencing data. Two approaches are used, one based on the count matrix, and one using the alignment BAM files directly. Contains several options for every step of the process, as well as tools to quality check and assess the stability of output.
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2024-12-21 |
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bioconductor-gdrutils
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public |
A package with helper functions for processing drug response data
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2024-12-21 |
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bioconductor-lace
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public |
Longitudinal Analysis of Cancer Evolution (LACE)
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2024-12-21 |
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bioconductor-xcore
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public |
xcore expression regulators inference
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2024-12-21 |
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bioconductor-qdnaseq
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public |
Quantitative DNA Sequencing for Chromosomal Aberrations
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2024-12-21 |
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bioconductor-beadarray
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public |
Quality assessment and low-level analysis for Illumina BeadArray data
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2024-12-21 |
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r-tailfindr
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public |
An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
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2024-12-21 |
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bioconductor-tbx20bamsubset
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public |
Subset of BAM files from the "TBX20" experiment
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2024-12-21 |
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bioconductor-linkhd
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public |
LinkHD: a versatile framework to explore and integrate heterogeneous data
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2024-12-21 |
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bioconductor-sponge
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public |
Sparse Partial Correlations On Gene Expression
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2024-12-21 |
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bioconductor-cn.mops
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public |
cn.mops - Mixture of Poissons for CNV detection in NGS data
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2024-12-21 |
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bioconductor-moma
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public |
Multi Omic Master Regulator Analysis
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2024-12-21 |
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bioconductor-proteomm
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public |
Multi-Dataset Model-based Differential Expression Proteomics Analysis Platform
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2024-12-21 |
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r-rblast
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public |
Seamlessly interfaces the Basic Local Alignment Search Tool (BLAST) to search genetic sequence data bases. This work was partially supported by grant no. R21HG005912 from the National Human Genome Research Institute.
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2024-12-21 |
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bioconductor-affyplm
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public |
Methods for fitting probe-level models
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2024-12-21 |
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rad_haplotyper
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public |
A program for building SNP haplotypes from RAD sequencing data
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2024-12-21 |
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bioconductor-rontotools
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public |
R Onto-Tools suite
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2024-12-21 |
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eden
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public |
No Summary
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2024-12-21 |
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bioconductor-scrapper
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public |
Bindings to C++ Libraries for Single-Cell Analysis
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2024-12-21 |
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bioconductor-hicbricks
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public |
Framework for Storing and Accessing Hi-C Data Through HDF Files
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2024-12-21 |
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bioconductor-affixcan
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public |
A Functional Approach To Impute Genetically Regulated Expression
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2024-12-21 |
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r-ampvis2
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public |
Tools for visualising amplicon data
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2024-12-21 |
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bioconductor-alabaster.ranges
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public |
Load and Save Ranges-related Artifacts from File
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2024-12-21 |
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hapcut2
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public |
Tools for haplotype assembly from sequence data
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2024-12-21 |
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bioconductor-epialleler
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public |
Fast, Epiallele-Aware Methylation Caller and Reporter
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2024-12-21 |
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orthologer
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public |
Establish orthology among fasta files.
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2024-12-21 |
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bioconductor-beadarrayexampledata
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public |
Example data for the beadarray package
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2024-12-21 |
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bioconductor-biomformat
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public |
An interface package for the BIOM file format
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2024-12-21 |
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kraken2
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public |
Kraken2 is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies.
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2024-12-21 |
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r-wasabi
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public |
Prepare Sailfish and Salmon output for downstream analysis
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2024-12-21 |
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bioconductor-phipdata
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public |
Container for PhIP-Seq Experiments
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2024-12-21 |
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bioconductor-alabaster.string
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public |
Save and Load Biostrings to/from File
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2024-12-21 |
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mlst
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public |
Scan contig files against PubMLST typing schemes
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2024-12-21 |
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bioconductor-raggedexperiment
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public |
Representation of Sparse Experiments and Assays Across Samples
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2024-12-21 |
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bioconductor-gsca
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public |
GSCA: Gene Set Context Analysis
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2024-12-21 |
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bioconductor-annotationhub
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public |
Client to access AnnotationHub resources
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2024-12-21 |
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bioconductor-uniprot.ws
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public |
R Interface to UniProt Web Services
|
2024-12-21 |
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bioconductor-scmitomut
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public |
Single-cell Mitochondrial Mutation Analysis Tool
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2024-12-21 |
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bioconductor-multiassayexperiment
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public |
Software for the integration of multi-omics experiments in Bioconductor
|
2024-12-21 |
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bioconductor-biomart
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public |
Interface to BioMart databases (i.e. Ensembl)
|
2024-12-21 |
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r-pore
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public |
An R package to enable organisation and visualisation of nanopore sequencing data
|
2024-12-21 |
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bioconductor-alabaster.base
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public |
Save Bioconductor Objects To File
|
2024-12-21 |
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bioconductor-msdata
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public |
Various Mass Spectrometry raw data example files
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2024-12-21 |
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r-leidenbase
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public |
An R to C interface that runs the Leiden community detection algorithm to find a basic partition
|
2024-12-21 |
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quantms-utils
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public |
Python package with scripts and helpers for the quantms workflow.
|
2024-12-20 |
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tower-cli
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public |
The Tower CLI an interface to Nextflow Tower via the CLI
|
2024-12-20 |
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mira-moods
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public |
MOODS: Motif Occurrence Detection Suite
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2024-12-20 |
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ms2deepscore
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public |
Deep learning similarity measure for comparing MS/MS spectra with respect to their chemical similarity
|
2024-12-20 |
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genenotebook
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public |
A colleborative notebook for comparative genomics
|
2024-12-20 |
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bioconductor-imman
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public |
Interlog protein network reconstruction by Mapping and Mining ANalysis
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2024-12-20 |
