| Package Name | Access | Summary | Updated |
|---|---|---|---|
| vcfsim | public | Script for generating simulated VCF's leveraging a coalescent simulating backend. | 2025-09-25 |
| snakemake-minimal | public | A popular workflow management system aiming at full in-silico reproducibility. | 2025-09-25 |
| bgen-cpp | public | Reference implementation of the BGEN format, written in C++ | 2025-09-25 |
| egglib | public | Evolutionary Genetics and Genomics Library. EggLib is a C++/Python library and program package for evolutionary genetics and genomics. Main features are sequence data management, sequence polymorphism analysis, and coalescent simulations. EggLib is a flexible Python module with a performant underlying C++ library and allows fast and intuitive development of Python programs and scripts. | 2025-09-25 |
| gnuplot-py | public | No Summary | 2025-09-25 |
| soapdenovo2-gapcloser | public | a tool named GapCloser for SOAPdenovo. | 2025-09-25 |
| piper | public | A lightweight python toolkit for gluing together restartable, robust command line pipelines. | 2025-09-25 |
| amiga | public | Analysis of Microbial Growth Assays | 2025-09-25 |
| paraviewer | public | Automated visualization generator for Paraphase HiFi analysis tool | 2025-09-25 |
| ngs-bits | public | Short-read sequencing tools. | 2025-09-25 |
| cenmap | public | A centromere mapping and annotation pipeline for T2T human and primate genome assemblies implemented in Snakemake. | 2025-09-25 |
| pxblat | public | PxBLAT: An Efficient and Ergonomics Python Binding Library for BLAT. | 2025-09-25 |
| seqwin | public | Ultrafast identification of signature sequences in microbial genomes via minimizer graphs | 2025-09-25 |
| stemcnv-check | public | StemCNV-check: CNV Based Quality Control Workflow for Stem Cell SNP Array Data. | 2025-09-25 |
| ena-webin-cli | public | Data submissions to ENA can be made using the Webin command line submission interface (Webin-CLI). | 2025-09-25 |
| hyplas | public | Hybrid long- short- plasmid assembler | 2025-09-25 |
| pbstarphase | public | A phase-aware pharmacogenomic diplotyper for PacBio sequencing data | 2025-09-25 |
| bamdam | public | A post-mapping, post-least-common-ancestor toolkit for ancient DNA analysis. | 2025-09-25 |
| merquryfk | public | MerquryFK replaces meryl with the FastK k-mer counter suite to considerably speed up analyses. | 2025-09-25 |
| relecov-tools | public | Tools for managing and processing of relecov data. | 2025-09-25 |
| flexiformatter | public | Moving flexiplex barcode and UMI to bam tags | 2025-09-25 |
| locityper | public | Targeted genotyper for complex polymorphic loci from short and long read WGS. | 2025-09-25 |
| octopusv | public | OctopusV: Advanced Structural Variant Analysis Toolkit. | 2025-09-25 |
| ggcaller | public | A de Bruijn graph-based gene-caller and pangenome analysis tool | 2025-09-25 |
| read2tree | public | Building phylogenetic trees directly from sequencing reads. | 2025-09-24 |
