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lib-pod5
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public |
Python bindings for the POD5 file format.
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2025-04-22 |
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strainy
|
public |
Assembly-based metagenomic strain phasing using long reads
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2025-04-22 |
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piawka
|
public |
The powerful AWK script to calculate population statistics in VCF files with support for varying ploidy and missing data
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2025-04-22 |
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starcatpy
|
public |
Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs.
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2025-04-22 |
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orthologer
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public |
Establish orthology among fasta files.
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2025-04-22 |
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poplddecay
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public |
PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format (VCF) files.
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2025-04-22 |
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lexicmap
|
public |
efficient sequence alignment against millions of prokaryotic genomes
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2025-04-22 |
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kegalign-full
|
public |
KegAlign: A Scalable GPU-Based Whole Genome Aligner
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2025-04-22 |
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cnmf
|
public |
Consensus NMF for scRNA-Seq data.
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2025-04-22 |
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r-cobrar
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public |
COnstraint-based Reconstruction and Analysis (COBRA) of metabolic networks in R
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2025-04-22 |
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pango-collapse
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public |
Collapse Pango sublineages up to user defined parent lineages.
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2025-04-22 |
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blast2galaxy
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public |
A Python package with a CLI and API to perform BLAST queries against Galaxy servers
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2025-04-22 |
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r-mams
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public |
R package for Matrix and Analysis Metadata Standards.
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2025-04-22 |
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squirrel
|
public |
Some QUIck Reconstruction to Resolve Evolutionary Links
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2025-04-22 |
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jclusterfunk
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public |
A command line tool with a bunch of functions for trees
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2025-04-22 |
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spatialleiden
|
public |
Implementation of multiplex Leiden for analysis of spatial omics data.
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2025-04-22 |
|
pling
|
public |
Pling computes the rearrangement distance between plasmids and clusters on their basis
|
2025-04-22 |
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bwa-aln-interactive
|
public |
Version of the BWA aln read mapper for interactive alignment.
|
2025-04-22 |
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tribal
|
public |
TRIBAL is a package to infer B cell lineage trees from single-cell RNA sequencing data.
|
2025-04-22 |
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popoolation2
|
public |
PoPoolation2 allows to compare allele frequencies for SNPs between two or more populations and to identify significant differences.
|
2025-04-22 |
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biobox_add_taxid
|
public |
CAMI amber utility script for adding the taxid output from GTDB and BAT
|
2025-04-22 |
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prymer
|
public |
Python Primer Design Library
|
2025-04-22 |
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snakemake-executor-plugin-tes
|
public |
A Snakemake executor plugin for submitting jobs to a GA4GH TES cluster.
|
2025-04-22 |
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r-buencolors
|
public |
R utility package for color mapping and plot aesthetics.
|
2025-04-22 |
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mquad
|
public |
MQuad: Mixture Model for Mitochondrial Mutation detection in single-cell omics data.
|
2025-04-22 |
