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cmseq
|
public |
Set of utilities on sequences and BAM files
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2023-06-16 |
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binlorry
|
public |
BinLorry, a flexible tool for binning and filtering sequencing reads
|
2023-06-16 |
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transindel
|
public |
transIndel is used to detect indels (insertions and deletions) from DNA-seq or RNA-seq data by parsing chimeric alignments from BWA-MEM..
|
2023-06-16 |
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bttoxin_scanner
|
public |
A toxin exploration tool for Bacillus thuringiensis
|
2023-06-16 |
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ddipy
|
public |
Python client for OmicsDI Restful API
|
2023-06-16 |
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eukrep
|
public |
Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets
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2023-06-16 |
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sensv
|
public |
SENSV
|
2023-06-16 |
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minipolish
|
public |
A tool for Racon polishing of miniasm assemblies
|
2023-06-16 |
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scxa-plots
|
public |
A set of wrappers to produce some bespoke plots used by the team behind Single-cell Expresion Atlas (SCXA) in single-cell RNA-seq analysis. Not to be confused with the plots displayed in SCXA itself.
|
2023-06-16 |
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clipcontext
|
public |
Extract CLIP-seq binding regions with both genomic and transcript context
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2023-06-16 |
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phylorank
|
public |
PhyloRank provides functionality for calculating the relative evolutionary
divergence (RED) of taxa in a tree and for finding the best placement of
taxonomic labels in a tree.
|
2023-06-16 |
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gnali
|
public |
gNALI (gene nonessentiality and loss-of-function identifier) is a tool for finding PLoF gene variants.
|
2023-06-16 |
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mpa-server
|
public |
Independent platform for interpretation of proteomics identification results
|
2023-06-16 |
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pybiomart
|
public |
A simple pythonic interface to biomart.
|
2023-06-16 |
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hail
|
public |
Hail is Python-based data analysis tool for working with genomic data.
|
2023-06-16 |
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svim-asm
|
public |
SVIM-asm is a fork of the SV caller SVIM for genome-genome alignments.
|
2023-06-16 |
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peaksql
|
public |
Dynamic machine learning database for genomics.
|
2023-06-16 |
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probabilistic2020
|
public |
Simulates somatic mutations, and calls statistically significant oncogenes and tumor suppressor genes based on a randomization-based test
|
2023-06-16 |
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yamda
|
public |
A highly scalable GPU-accelerated de novo motif discovery software package
|
2023-06-16 |
|
cmash
|
public |
Fast and accurate set similarity estimation via containment min hash (for genomic datasets).
|
2023-06-16 |
|
gaas
|
public |
Suite of tools related to Genome Assembly Annotation Service tasks at NBIS.
|
2023-06-16 |
|
perl-yaml-pp
|
public |
YAML 1.2 Processor
|
2023-06-16 |
|
perl-io-null
|
public |
class for null filehandles
|
2023-06-16 |
|
kinamine_y_shaker
|
public |
Kinamine is a tool to export all phospho-peptides that were discovered by a mass spec search program
|
2023-06-16 |
|
goetia
|
public |
streaming de Bruijn graph compaction and sketching.
|
2023-06-16 |
|
prophane
|
public |
Annotate your metaproteomic search results
|
2023-06-16 |
|
diapysef
|
public |
Analysis, conversion and visualization of diaPASEF data.
|
2023-06-16 |
|
isonclust
|
public |
De novo clustering of long-read transcriptome reads.
|
2023-06-16 |
|
deepacvir
|
public |
Detecting novel human viruses from DNA reads with reverse-complement neural networks.
|
2023-06-16 |
|
deepacstrain
|
public |
Predicting pathogenic potentials of novel strains of known bacterial species.
|
2023-06-16 |
|
pubmlst_client
|
public |
List and download schemes from pubMLST.org
|
2023-06-16 |
|
gcluster
|
public |
Gcluster is a simple-to-use tool for visualizing and comparing genome contexts for numerous genomes
|
2023-06-16 |
|
scran-cli
|
public |
A set of wrappers for individual components of the scran R package. Scran implements functions for low-level analyses of single-cell RNA-seq data.Functions R packages are hard to call when building workflows outside of R, so this package adds a set of simple wrappers with robust argument parsing.
|
2023-06-16 |
|
perl-gd-svg
|
public |
Seamlessly enable SVG output from scripts written using GD
|
2023-06-16 |
|
kcalign
|
public |
Kalgin-based codon-aware aligner for multiple sequences
|
2023-06-16 |
|
readucks
|
public |
Readucks: a simple demultiplexer for nanopore reads
|
2023-06-16 |
|
riboseqc
|
public |
Read length specific QC of Ribo-seq data
|
2023-06-16 |
|
rkp
|
public |
Relative K-mer Project
|
2023-06-16 |
|
r-transphylo
|
public |
Reconstruction of transmission trees using genomic data
|
2023-06-16 |
|
rnabloom
|
public |
Java tool for RNA-seq assembly
|
2023-06-16 |
|
yapc
|
public |
Yapc is a (yet another) peak caller for genomic high-throughput sequencing data
|
2023-06-16 |
|
tadbit
|
public |
TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data.
|
2023-06-16 |
|
callstate
|
public |
A replacement for GATK3 CallableLoci
|
2023-06-16 |
|
coral
|
public |
Coral is an efficient tool to bridge paire-end RNA-seq reads.
|
2023-06-16 |
|
sigmut
|
public |
Wrapper of SigProfiler (Copyright(c) 2019, Erik Bergstrom [Alexandrov Lab])
|
2023-06-16 |
|
sicer2
|
public |
Redesigned and improved ChIP-seq broad peak calling tool SICER.
|
2023-06-16 |
|
pyslim
|
public |
Manipulate tree sequences produced by SLiM.
|
2023-06-16 |
|
pgx-pipe-helper
|
public |
A helper module for wrapping functionality which is common to all pipeline stages.
|
2023-06-16 |
|
phylics
|
public |
Single-cell CNV data analysis toolkit
|
2023-06-16 |
|
phastaf
|
public |
Identify phage regions in bacterial genomes for masking purposes
|
2023-06-16 |
