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bg
|
public |
Implementation of Breakpoint Graph data structure
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2023-06-18 |
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ifcnv
|
public |
ifCNV: a novel isolation-forest-based package to detect copy number variations from various NGS datasets.
|
2023-06-18 |
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titanomics
|
public |
A comprehensive multi-omics data analysis pipeline.
|
2023-06-18 |
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bialign
|
public |
Bialignment of RNAs and proteins
|
2023-06-18 |
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chiton
|
public |
Chiton provides a Python wrapper to commonly used bioinformatics programs.
|
2023-06-18 |
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pyfish
|
public |
Plotting tool for evolutionary population dynamics. Creates a Fish (Muller) plot.
|
2023-06-18 |
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macs
|
public |
Model Based Analysis for ChIP-Seq data
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2023-06-18 |
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squire
|
public |
Quantitative, locus-specific view of transposable element expression.
|
2023-06-18 |
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lepwrap
|
public |
The Snakemake pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring+orienting genome assemblies.
|
2023-06-18 |
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epytope
|
public |
A Framework for Epitope Detection and Vaccine Design
|
2023-06-18 |
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metamlst
|
public |
A computational pipeline for MLST typing from metagenomic data
|
2023-06-18 |
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theiacov-gc
|
public |
Command-line version of the TheiaCov genomic characterization workflow for SARS-CoV-2.
|
2023-06-18 |
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secedo
|
public |
SNV-based clustering for single-cell sequencing data
|
2023-06-18 |
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metaomestats
|
public |
Scripts for calculating statistics from FASTA sequences
|
2023-06-18 |
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simscsntree
|
public |
Simulating single cell sequencing data
|
2023-06-18 |
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perl-pod-eventual
|
public |
read a POD document as a series of trivial events
|
2023-06-18 |
|
perl-test2-plugin-nowarnings
|
public |
Fail if tests warn
|
2023-06-18 |
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mudskipper
|
public |
mudskipper is a tool for converting genomic BAM/SAM files to transcriptomic BAM/RAD files.
|
2023-06-18 |
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trimap
|
public |
TriMap: Large-scale Dimensionality Reduction Using Triplets
|
2023-06-18 |
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pmga
|
public |
Command-line version of PMGA (PubMLST Genome Annotator) for all Neisseria species and Haemophilus influenzae
|
2023-06-18 |
|
perl-bio-procedural
|
public |
Simple low-dependency procedural interfaces to BioPerl
|
2023-06-18 |
|
perl-bio-db-swissprot
|
public |
Database object interface to SwissProt retrieval
|
2023-06-18 |
|
perl-bio-db-embl
|
public |
Database object interface for EMBL entry retrieval
|
2023-06-18 |
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perl-bio-db-refseq
|
public |
Database object interface for RefSeq retrieval
|
2023-06-18 |
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perl-bio-tools-run-remoteblast
|
public |
Object for remote execution of the NCBI Blast via HTTP
|
2023-06-18 |
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binning_refiner
|
public |
Improving genome bins through the combination of different binning programs
|
2023-06-18 |
|
gloome
|
public |
GLOOME is a program that analyzes the evolution of phyletic patterns within the likelihood framework.
|
2023-06-18 |
|
rpfa
|
public |
Cli interface to run OptGene/OptKnock with an heterologous pathway
|
2023-06-18 |
|
perl-crypt-openssl-guess
|
public |
Guess OpenSSL include path
|
2023-06-18 |
|
python_circos
|
public |
Circos plots for python
|
2023-06-18 |
|
debreak
|
public |
DeBreak, Deciphering the exact breakpoints of structural variations using long sequencing reads
|
2023-06-18 |
|
r-beyondcell
|
public |
Tool for the Analysis of tumour therapeutic heterogeneity in single-cell RNA-seq
|
2023-06-18 |
|
3d-dna
|
public |
3D de novo assembly (3D-DNA) pipeline.
|
2023-06-18 |
|
hilinetojuicer
|
public |
Convert HiLine SAM alignments to Juicer format
|
2023-06-18 |
|
consplice
|
public |
The Constrained Splicing (ConSplice) python module
|
2023-06-18 |
|
linkstats
|
public |
Collect and process statistics from aligned linked-reads.
|
2023-06-18 |
|
plotsr
|
public |
Visualiser for structural annotations between multiple genomes
|
2023-06-18 |
|
coidb
|
public |
A tool to obtain and maintain a database of COI metabarcode references
|
2023-06-16 |
|
nwalign3
|
public |
Updated version of nwalign with Python 3.x compatibility.
|
2023-06-16 |
|
seqlike
|
public |
Flexible biological sequence objects in Python
|
2023-06-16 |
|
sgcocaller
|
public |
Personalized haplotype construction and crossover calling in single-cell DNA sequenced gamete cells.
|
2023-06-16 |
|
rcsbsearch
|
public |
Access the RCSB Search API
|
2023-06-16 |
|
metawrap-mg
|
public |
MetaWRAP is a pipeline for genome-resolved metagenomic data analysis
|
2023-06-16 |
|
tsv-utils
|
public |
eBay's TSV Utilities
|
2023-06-16 |
|
dnaweaver_synbiocad
|
public |
Build the genetic designs generated by the SynBioCAD project using either Golden Gate or Gibson assembly
|
2023-06-16 |
|
longqc
|
public |
LongQC is a tool for the data quality control of the PacBio and ONT long reads
|
2023-06-16 |
|
igda-script
|
public |
The wrapper script of iGDA to detect and phase minor SNVs from long-read sequencing data
|
2023-06-16 |
|
dnaweaver
|
public |
Python library to find optimal strategies for assembling large DNA constructs.
|
2023-06-16 |
|
hamroaster
|
public |
An analysis pipeline to compare the output of different AMR detection tools and provide metrics of their performance
|
2023-06-16 |
|
mcroni
|
public |
mcr-1 analysis
|
2023-06-16 |
