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bioconductor-pathvar
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public |
Methods to Find Pathways with Significantly Different Variability
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2023-07-07 |
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perl-cpan-meta-requirements
|
public |
a set of version requirements for a CPAN dist
|
2023-07-07 |
|
bioconductor-biocdockermanager
|
public |
Access Bioconductor docker images
|
2023-07-07 |
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esviritu
|
public |
EsViritu: Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data
|
2023-07-07 |
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svim
|
public |
SVIM is a structural variant caller for long reads.
|
2023-07-07 |
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perl-http-date
|
public |
date conversion routines
|
2023-07-07 |
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ultra_bioinformatics
|
public |
Splice aligner of long transcriptomic reads to genome.
|
2023-07-06 |
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svhip
|
public |
Retrainable machine learning pipeline for the detection of secondary structure conservation on a genome-level.
|
2023-07-06 |
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shigatyper
|
public |
Typing tool for Shigella spp. from WGS Illumina sequencing
|
2023-07-06 |
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tspex
|
public |
A Python package for calculating tissue-specificity metrics for gene expression.
|
2023-07-04 |
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pedesigner
|
public |
A tool for prime-editing guideRNA (pegRNA) design
|
2023-07-04 |
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dropest
|
public |
Pipeline for initial analysis of droplet-based single-cell RNA-seq data
|
2023-07-04 |
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modle
|
public |
High-performance stochastic modeling of DNA loop extrusion interactions
|
2023-07-04 |
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perl-statistics-descriptive
|
public |
Module of basic descriptive statistical functions.
|
2023-07-02 |
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peglit
|
public |
Automatically identifies non-interfering nucleotide linkers between a pegRNA and 3' motif
|
2023-07-01 |
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python-monovar
|
public |
single cell joint genotyper, patched version
|
2023-07-01 |
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ptgaul
|
public |
Plastid Genome Assembly Using long-read data (ptGAUL)
|
2023-07-01 |
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paste-bio
|
public |
A computational method to align and integrate spatial transcriptomics experiments.
|
2023-06-30 |
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matchmsextras
|
public |
Additional network analysis functions for matchms
|
2023-06-30 |
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niemads
|
public |
NiemaDS: Non-standard data structures for Python 2 and 3
|
2023-06-30 |
|
shigeifinder
|
public |
Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies
|
2023-06-30 |
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phate
|
public |
PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.
|
2023-06-29 |
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viromeqc
|
public |
Provides an enrichment score for VLP viromes with respect to metagenomes
|
2023-06-29 |
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constellations
|
public |
Descriptions of constellations of mutations for the SARS-CoV-2 virus
|
2023-06-29 |
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seqfold
|
public |
Predict the minimum free energy and structure of nucleic acids.
|
2023-06-28 |
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surpyvor
|
public |
Evaluating, merging and plotting SV vcf files
|
2023-06-24 |
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pyroe
|
public |
A python toolkit to aid with scRNA-seq analysis workflows using alevin-fry
|
2023-06-24 |
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acdc
|
public |
(a)utomated (c)ontamination (d)etection and (c)onfidence estimation for single-cell genome data
|
2023-06-23 |
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r-enchantr
|
public |
Analysis of immune repertoires. QC and reports for the analysis of AIRR-seq data with Immcantation
|
2023-06-22 |
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scprep
|
public |
Tools for loading and preprocessing biological matrices in Python.
|
2023-06-22 |
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tassel
|
public |
TASSEL is a software package to evaluate traits associations, evolutionary patterns, and linkage disequilibrium.
|
2023-06-22 |
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r-recetox-xmsannotator
|
public |
Annotate peak intensity table with compounds from the compounds database. A heavily modified fork of the original xMSannotator by Karan Uppal.
|
2023-06-22 |
|
clinvar-tsv
|
public |
A Snakemake-based program to download ClinVar and convert to easy-to-use TSV files.
|
2023-06-22 |
|
cpc2
|
public |
Coding Potential Calculator 2 (CPC2)
|
2023-06-18 |
|
latch
|
public |
A python bioinformatics framework
|
2023-06-18 |
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eklipse
|
public |
eKLIPse is a sensitive and specific tool allowing the detection and quantification of large mtDNA rearrangements.
|
2023-06-18 |
|
methphaser
|
public |
MethPhaser: methylation-based haplotype phasing of human genomes
|
2023-06-18 |
|
quickbam
|
public |
Parallel BAM file access API for high throughput sequence analysis informatics
|
2023-06-18 |
|
rmats-long
|
public |
rMATS-long is an integrated computational workflow for long-read RNA-seq data
|
2023-06-18 |
|
ncbitax2lin
|
public |
NCBItax2lin
|
2023-06-18 |
|
fununifrac
|
public |
A repository to implement UniFrac, but on functional profiles of metagenomic data.
|
2023-06-18 |
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minibusco
|
public |
minibusco: a faster and more accurate reimplementation of BUSCO
|
2023-06-18 |
|
perl-bio-phylo-forest-dbtree
|
public |
DBIx::Class-backed, Bio::Phylo-like API for large phylogenies.
|
2023-06-18 |
|
julia-divand
|
public |
Performs an n-dimensional variational analysis/gridding of arbitrarily located observations
|
2023-06-18 |
|
upd
|
public |
Simple software to call UPD regions from germline exome/wgs trios.
|
2023-06-18 |
|
mlgenotype
|
public |
A package with utilities for training random forest classifiers to recognize SVs in short read datasets
|
2023-06-18 |
|
crisprlungo
|
public |
A software pipeline for analyzing single-anchor amplicon sequencing and quantifying complex genome editing outcomes
|
2023-06-18 |
|
pydmtools
|
public |
A python extension written in C for quick access to DNA methylation DM files.
|
2023-06-18 |
|
cladeomatic
|
public |
Clade-O-Matic: Automatic recognition of population structures based on canonical SNPs
|
2023-06-18 |
|
tolkein
|
public |
Tree of Life Kit of Evolutionary Informatics Novelties
|
2023-06-18 |
