|
frogs
|
public |
FROGS is a workflow designed to metabarcoding sequence analysis
|
2024-06-07 |
|
rrikindp
|
public |
Evaluation of thermodynamic and kinetic features of RNA-RNA interactions.
|
2024-06-07 |
|
perl-dbm-deep
|
public |
A pure perl multi-level hash/array DBM that supports transactions
|
2024-06-07 |
|
galitime
|
public |
benchmarking of scientific computaional experiments
|
2024-06-07 |
|
tbvcfreport
|
public |
Parses SnpEff annotated M.tb VCF(s) and generates an interactive HTML-based report.
|
2024-06-07 |
|
mmlong2-lite
|
public |
Lightweight workflow for microbial genome recovery using either Nanopore or PacBio HiFi reads
|
2024-06-07 |
|
cialign
|
public |
Toolkit for cleaning and interpreting multiple sequence alignments
|
2024-06-07 |
|
bioconductor-cytoml
|
public |
A GatingML Interface for Cross Platform Cytometry Data Sharing
|
2024-06-06 |
|
seqhax
|
public |
A collection of next-gen sequence data utilities
|
2024-06-06 |
|
squid
|
public |
Detector for fusion-gene and non-fusion-gene transcriptomic structural variations from RNA-seq data
|
2024-06-06 |
|
tksm
|
public |
Very modular, very cool long-read transcriptomic simulator
|
2024-06-06 |
|
bioconductor-iclusterplus
|
public |
Integrative clustering of multi-type genomic data
|
2024-06-06 |
|
megapath
|
public |
MegaPath: sensitive and rapid pathogen detection using metagenomic NGS data; MegaPath-Amplicon: filtering module for metagenomic amplicon data
|
2024-06-06 |
|
hapog
|
public |
Haplotype-Aware Polishing of Genomes
|
2024-06-06 |
|
sonlib
|
public |
Small general purpose library for C and Python with focus on bioinformatics.
|
2024-06-06 |
|
celltypist
|
public |
A tool for semi-automatic cell type annotation
|
2024-06-06 |
|
ariba
|
public |
ARIBA: Antibiotic Resistance Identification By Assembly
|
2024-06-05 |
|
igblast
|
public |
A tool for analyzing immunoglobulin (IG) and T cell receptor (TR) sequences
|
2024-06-05 |
|
perl-test2-suite
|
public |
Distribution with a rich set of tools built upon the Test2 framework.
|
2024-06-05 |
|
forgi
|
public |
RNA Graph Library
|
2024-06-05 |
|
integron_finder
|
public |
Integron Finder aims at detecting integrons in DNA sequences
|
2024-06-05 |
|
ragout
|
public |
Chromosome-level scaffolding using multiple references
|
2024-06-05 |
|
peakranger
|
public |
PeakRanger is a multi-purporse software suite for analyzing next-generation sequencing (NGS) data.
|
2024-06-05 |
|
zarp
|
public |
User-friendly command-line interface for the ZARP RNA-Seq analysis pipeline
|
2024-06-05 |
|
commet
|
public |
Comparing and combining multiple metagenomic datasets
|
2024-06-05 |
|
npinv
|
public |
an accurate tool for detecting and genotyping inversion using multiple alignment long reads
|
2024-06-05 |
|
mztosqlite
|
public |
Convert proteomics data files into a SQLite database.
|
2024-06-05 |
|
gametes
|
public |
Tool for the generation of complex single SNP models
|
2024-06-04 |
|
metanovo
|
public |
Produce targeted databases for mass spectrometry analysis.
|
2024-06-04 |
|
squeakr
|
public |
An Exact and Approximate k-mer Counting System
|
2024-06-04 |
|
assemblycomparator2
|
public |
assemblycomparator2: Compare prokaryotic genomic assemblies
|
2024-06-04 |
|
pcst-fast
|
public |
A fast implementation of the Goemans-Williamson scheme for the PCST (prize-collecting Steiner tree/forest) problem.
|
2024-06-04 |
|
dawg
|
public |
DNA Assembly with Gaps (Dawg) is an application designed to simulate the evolution of recombinant DNA sequences in continuous time based on the robust general time reversible model with gamma and invariant rate heterogeneity and a novel length-dependent model of gap formation.
|
2024-06-04 |
|
cassiopee
|
public |
scan an input genomic sequence (dna/rna/protein) and search for a subsequence with exact match or allowing substitutions (Hamming distance) and/or insertion/deletions
|
2024-06-04 |
|
bandage_ng
|
public |
Bandage - a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
|
2024-06-04 |
|
batch_brb
|
public |
A tool for the automation of best reciprocal BLAST and phylogenetic analysis using FastTree.
|
2024-06-04 |
|
mob_suite
|
public |
MOB-suite is a set of tools for finding, typing and reconstruction of plasmids from draft and complete genome assemblies.
|
2024-06-04 |
|
orthofisher
|
public |
Orthofisher is a broadly applicable tool for automated gene identification and retrieval.
|
2024-06-03 |
|
bacpage
|
public |
An easy-to-use pipeline for the assembly and analysis of bacterial genomes
|
2024-06-03 |
|
funannotate
|
public |
funannotate: eukaryotic genome annotation pipeline
|
2024-06-03 |
|
snakemake-executor-plugin-lsf
|
public |
A Snakemake executor plugin for submitting jobs to a LSF cluster.
|
2024-06-03 |
|
ervdetective
|
public |
An efficient pipeline for identification and annotation of endogenous retroviruses (ERVs).
|
2024-06-03 |
|
nanomonsv
|
public |
Python tools for detecting structural variation from nanopore sequence data
|
2024-06-03 |
|
sspace_basic
|
public |
Scaffolding Pre-Assemblies After Contig Extension (SSPACE)
|
2024-06-03 |
|
dodge
|
public |
Dynamic Outbreak Detection for Genomic Epidemiology. Automated point source bacterial outbreak detection using cumulative long term genomic surveillance.
|
2024-06-03 |
|
airr
|
public |
AIRR Community Data Representation Standard reference library for antibody and TCR sequencing data. Citations: AIRR standards <doi:10.5281/zenodo.1185414>.
|
2024-06-03 |
|
vcf2maf
|
public |
Convert a VCF into a MAF where each variant is annotated to only one of all possible gene isoforms.
|
2024-05-31 |
|
anospp-analysis
|
public |
ANOSPP data analysis
|
2024-05-31 |
|
npstructures
|
public |
Simple data structures that augments the numpy library
|
2024-05-31 |
|
hmftools-mark-dups
|
public |
Mark read duplicates and form consenus sequences
|
2024-05-31 |
