| Package Name | Access | Summary | Updated |
|---|---|---|---|
| haplink | public | Viral haplotype calling via linkage disequilibrium | 2025-04-22 |
| magus-msa | public | Multiple Sequence Alignment using Graph Clustering | 2025-04-22 |
| ale-core | public | ALE: Assembly Likelihood Estimator. Core C implemented scoring programs only without supplementary plotting scripts. | 2025-04-22 |
| tracknado | public | CLI library to generate UCSC trackhubs from sequencing data | 2025-04-22 |
| aligncov | public | Obtain tidy alignment coverage info from sorted BAM files | 2025-04-22 |
| allo | public | Multi-mapped read rescue strategy for gene regulatory analyses | 2025-04-22 |
| mira-moods | public | MOODS: Motif Occurrence Detection Suite | 2025-04-22 |
| gimbleprep | public | Preprocess fasta, bam and vcf files ready to be used by gimble | 2025-04-22 |
| rsrq | public | A minimal Redis-backed queue system. | 2025-04-22 |
| eternafold | public | RNA structure prediction algorithm improved through crowdsourced training data | 2025-04-22 |
| ksnp | public | k-mer based haplotype assembly | 2025-04-22 |
| tcdemux | public | Demultiplex files and prepare reads for the target capture analysis pipeline. | 2025-04-22 |
| cmsearch_tblout_deoverlap | public | cmsearch-deoverlap.pl: remove lower scoring overlaps from cmsearch | 2025-04-22 |
| rich-msa | public | A Rich renderable for viewing Multiple Sequence Alignments in the terminal. | 2025-04-22 |
| cytosnake | public | Orchestrating high-dimensional cell morphology data processing pipelines | 2025-04-22 |
| sfs | public | CLI tool for site frequency spectra. | 2025-04-22 |
| tsebra | public | TSEBRA is a combiner tool that selects transcripts from gene predictions based on the support by extrisic evidence in form of introns and start/stop codons. | 2025-04-22 |
| noah-cli | public | a project management tool for reproducible, portable, and streamlined bioinformatics analysis | 2025-04-22 |
| cstag-cli | public | Command line interface of cstag to manipulate the minimap2's CS tag | 2025-04-22 |
| sylph | public | sylph quickly enables querying of genomes against even low-coverage shotgun metagenomes to find nearest neighbour ANI. | 2025-04-22 |
| ms-entropy | public | This package provides a Python implementation of calculating spectral entropy, entropy similarity, and Flash entropy search for mass spectrometry data. | 2025-04-22 |
| happy-python | public | Haploidy and Size Completeness Estimation with Python | 2025-04-22 |
| dnamarkmaker | public | DNAMarkMaker: pipeline to development ARMS and CAPS marker | 2025-04-22 |
| kinship-read | public | Relationship Estimation from Ancient DNA version 2 (READv2) | 2025-04-22 |
| crispector2 | public | Accurate estimation of off-target editing activity from comparative NGS data | 2025-04-22 |
