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Package Name Access Summary Updated
cd-hit-auxtools public Clusters and compares protein or nucleotide sequences 2024-12-12
fastq-tools public A collection of fastq manipulation scripts written in C for speed. 2024-12-12
eternafold public RNA structure prediction algorithm improved through crowdsourced training data 2024-12-12
perl-perlio-gzip public PerlIO interface to gzip/gunzip 2024-12-12
multiz public DNA multiple sequence aligner from Penn State's Miller lab. 2024-12-12
canopy public Canopy - Metagenomics Canopy Clustering Implementation 2024-12-12
genepop public Population Genetic Data Analysis package. 2024-12-12
flexserv public FlexServ protein structure conformational ensemble generation tools 2024-12-12
ucsc-fasomerecords public Extract multiple fa records 2024-12-12
zagros public No Summary 2024-12-12
perl-findbin-real public Locates the full path to the script bin directory to allow the use of paths relative to the bin directory. 2024-12-12
gfatools public Tools for manipulating sequence graphs in the GFA and rGFA formats 2024-12-12
perl-list-someutils public Provide the stuff missing in List::Util 2024-12-12
bloocoo public Bloocoo is a k-mer spectrum-based read error corrector, designed to correct large datasets with a very low memory footprint. As an example, it can correct whole human genome re-sequencing reads at 70 x coverage with less than 4GB of memory. 2024-12-12
isospecpy public Python interface to IsoSpec++ isotopic envelope calculator library 2024-12-12
raptor public Raptor: A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences 2024-12-12
r-goalie public Assertive check functions for defensive R programming. 2024-12-12
cofold public An RNA secondary structure prediction method that takes co-transcriptional folding into account. 2024-12-12
nmrglue public A module for working with NMR data in Python 2024-12-12
maxit public MAXIT assists in the processing and curation of macromolecular structure data. 2024-12-12
abpoa public abPOA: fast SIMD-based partial order alignment using adaptive band 2024-12-12
trf public Tandem Repeats Finder is a program to locate and display tandem repeats in DNA sequences. 2024-12-12
ucsc-countchars public Count the number of occurrences of a particular char 2024-12-12
vcftools public A set of tools written in Perl and C++ for working with VCF files. This package only contains the C++ libraries whereas the package perl-vcftools-vcf contains the perl libraries 2024-12-12
seqtk public Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format 2024-12-12
ninja-nj public Nearly Infinite Neighbor Joining Application 2024-12-12
scssim public A bioinformatics tool for simulating single-cell genome sequencing data 2024-12-12
ucsc-wordline public chop up words by white space and output them with one 2024-12-12
sdust public Symmetric DUST for finding low-complexity regions in DNA sequences. 2024-12-12
haploflow public Strain-aware viral genome assembler for short read sequence data 2024-12-12
mapcaller public MapCaller: combined short-read mapper and variant caller 2024-12-12
ucsc-netsplit public Split a genome net file into chromosome net files 2024-12-12
ucsc-qacagplift public Use AGP to combine per-scaffold qac into per-chrom qac. 2024-12-12
fqgrep public Search a pair of fastq files for reads that match a given ref or alt sequence 2024-12-12
mergenotcombined public Merge Forward and reverse reads from fastq files 2024-12-12
bamhash public No Summary 2024-12-12
ucsc-faalign public Align two fasta files 2024-12-12
evidencemodeler public Evidence Modeler combines ab intio gene predictions, protein alignments, and transcript alignments into weighted consensus gene structures 2024-12-12
booster public BOOSTER is a new way of computing bootstrap supports in large phylogenies. 2024-12-12
rustynuc public Quick analysis of pileups for likely 8-oxoG locations 2024-12-12
assemblyutility public No Summary 2024-12-12
smoothxg public Local reconstruction of variation graphs using partial order alignment 2024-12-12
vcfbub public Popping bubbles in vg deconstruct VCFs 2024-12-12
ucsc-pslsortacc public Remove chain-breaking alignments from chains that break nested chains. 2024-12-12
python-hyphy-python public HyPhy package interface library 2024-12-12
fastsimbac public Models bacterial recombination 2024-12-12
selam public Simulation of Epistasis Local adaptation, with Ancestry and Mate choice 2024-12-12
ucsc-catdir public concatenate files in directory to stdout. 2024-12-12
methbat public A battery of methylation tools for PacBio HiFi reads 2024-12-12
ucsc-fatotab public convert fa file to tab separated file 2024-12-12
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