| Package Name | Access | Summary | Updated |
|---|---|---|---|
| perl-extutils-parsexs | public | Converts Perl XS code into C code. | 2025-09-27 |
| spades | public | SPAdes (St. Petersburg genome assembler) is intended for both standard isolates and single-cell MDA bacteria assemblies. | 2025-09-27 |
| randfold | public | No Summary | 2025-09-26 |
| maxbin2 | public | MaxBin is software for binning assembled metagenomic sequences based on an Expectation-Maximization algorithm. | 2025-09-26 |
| corset | public | Software for clustering de novo assembled transcripts and counting overlapping reads. | 2025-09-26 |
| ephemeris | public | Ephemeris is an opinionated library and set of scripts for managing the bootstrapping of Galaxy project plugins - tools, index data, and workflows. | 2025-09-26 |
| spaln | public | Map and align a set of cDNA/EST or protein sequences onto a genome. | 2025-09-26 |
| kma | public | KMA is a mapping method designed to map raw reads directly against redundant databases, in an ultra-fast manner using seed and extend. | 2025-09-26 |
| ensembl-vep | public | Ensembl Variant Effect Predictor | 2025-09-26 |
| clustalo | public | Latest version of Clustal: a multiple sequence alignment program for DNA or proteins | 2025-09-26 |
| emboss | public | The European Molecular Biology Open Software Suite | 2025-09-26 |
| consel | public | CONSEL calculates the probability value (i.e., p-value) to assess the confidence in the selection problem. Although CONSEL is applicable to any selection problem, it is mainly designed for the phylogenetic tree selection | 2025-09-26 |
| kmc | public | Tools for efficient k-mer counting and filtering of reads based on k-mer content. | 2025-09-25 |
| snakemake | public | A popular workflow management system aiming at full in-silico reproducibility. | 2025-09-25 |
| snakemake-minimal | public | A popular workflow management system aiming at full in-silico reproducibility. | 2025-09-25 |
| egglib | public | Evolutionary Genetics and Genomics Library. EggLib is a C++/Python library and program package for evolutionary genetics and genomics. Main features are sequence data management, sequence polymorphism analysis, and coalescent simulations. EggLib is a flexible Python module with a performant underlying C++ library and allows fast and intuitive development of Python programs and scripts. | 2025-09-25 |
| gnuplot-py | public | No Summary | 2025-09-25 |
| soapdenovo2-gapcloser | public | a tool named GapCloser for SOAPdenovo. | 2025-09-25 |
| ngs-bits | public | Short-read sequencing tools. | 2025-09-25 |
| squid | public | Detector for fusion-gene and non-fusion-gene transcriptomic structural variations from RNA-seq data | 2025-09-24 |
| perl-module-corelist | public | What modules shipped with versions of perl. | 2025-09-24 |
| perl-test-inter | public | Framework for more readable interactive test scripts. | 2025-09-24 |
| imfusion | public | No Summary | 2025-09-24 |
| wgsim | public | No Summary | 2025-09-24 |
| tophat | public | A spliced read mapper for RNA-Seq. | 2025-09-24 |
