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anvio-minimal
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public |
An interactive analysis and visualization platform for omics data
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2025-04-22 |
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fsm-lite
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public |
Frequency-based String Mining (lite)
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2025-04-22 |
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purge_haplotigs
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public |
Pipeline to help with curating heterozygous diploid genome assemblies.
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2025-04-22 |
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perl-gtdbtk
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public |
Perl script and dependent library files required for GTDB-Tk.
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2025-04-22 |
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tinyfasta
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public |
Tiny Python package, with no external dependencies, for parsing FASTA sequence files.
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2025-04-22 |
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kinsimriboswitch
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public |
Pipeline for the simulation of RNA--ligand interaction kinetics as
outlined in Kuehnl et al. 2017, https://doi.org/10.1186/s12859-017-1823-5
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2025-04-22 |
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r-msqrob
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public |
Robust statistical inference for quantitative LC-MS proteomics.
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2025-04-22 |
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rapidnj
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public |
RapidNJ is an algorithmic engineered implementation of canonical neighbour-joining. It uses an efficient search heuristic to speed-up the core computations of the neighbour-joining method that enables RapidNJ to outperform other state-of-the-art neighbour-joining implementations.
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2025-04-22 |
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r-dgeclustering
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public |
DGEclustering is an R package for multidimensional clustering of differential gene expression datasets, and it integrates GO annotations to improve the clustering result.
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2025-04-22 |
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bioconductor-sc3-scripts
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public |
A set of wrappers for individual components of the SC3 package. Functions R packages are hard to call when building workflows outside of R, so this package adds a set of simple wrappers with robust argument parsing. Intermediate steps are currently mainly serialized R objects, but the ultimate objective is to have language-agnostic intermediate formats allowing composite workflows using a variety of software packages.
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2025-04-22 |
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admixture
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public |
ADMIXTURE is a software tool for maximum likelihood estimation of individual ancestries from multilocus SNP genotype datasets.
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2025-04-22 |
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revtrans
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public |
revtrans - performs a reverse translation of a peptide alignment.
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2025-04-22 |
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slimm
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public |
SLIMM - Species Level Identification of Microbes from Metagenomes
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2025-04-22 |
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perl-bundle-bioperl
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public |
A bundle to install external CPAN modules used by BioPerl 1.5.2
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2025-04-22 |
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bpp-popgen
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public |
Bio++ is a set of C++ libraries for Bioinformatics.
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2025-04-22 |
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red
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public |
Red (RepeatsDetector): an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale.
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2025-04-22 |
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gatktool
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public |
Functions and classes used to extend a GATK tool with Python
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2025-04-22 |
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metaxa
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public |
Improved Identification and Taxonomic Classification of Small and Large Subunit rRNA in Metagenomic Data.
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2025-04-22 |
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r-metstat
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public |
A diverse collection of metabolomics related statistical tools.
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2025-04-22 |
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r-popgenome
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public |
Provides efficient tools for population genomics data analysis, able to process individual loci, large sets of loci, or whole genomes. PopGenome <DOI:10.1093/molbev/msu136> not only implements a wide range of population genetics statistics, but also facilitates the easy implementation of new algorithms by other researchers. PopGenome is optimized for speed via the seamless integration of C code.
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2025-04-22 |
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r-blockfest
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public |
An R implementation of an extension of the 'BayeScan' software (Foll, 2008) <DOI:10.1534/genetics.108.092221> for codominant markers, adding the option to group individual SNPs into pre-defined blocks. A typical application of this new approach is the identification of genomic regions, genes, or gene sets containing one or more SNPs that evolved under directional selection.
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2025-04-22 |
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biolib
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public |
Package for common tasks in bioinformatics.
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2025-04-22 |
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smeg
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public |
Strain-level Metagenomic Estimation of Growth rate (SMEG) measures growth rates of microbial strains from complex metagenomic dataset
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2025-04-22 |
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cgatcore
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public |
CGAT : the Computational Genomics Analysis Toolkit
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2025-04-22 |
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dadi
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public |
Fit population genetic models using diffusion approximations to the allele frequency spectrum
|
2025-04-22 |
