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umi_tools
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public |
Tools for dealing with Unique Molecular Identifiers (UMIs) / Random Molecular Tags (RMTs).
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2025-04-22 |
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cap-mirseq
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public |
A comprehensive analysis pipeline for deep microRNA sequencing
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2025-04-22 |
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gcs-oauth2-boto-plugin
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public |
Auth plugin allowing use the use of OAuth 2.0 credentials for Google Cloud Storage in the Boto library.
|
2025-04-22 |
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retry_decorator
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public |
Retry Decorator
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2025-04-22 |
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socksipy-branch
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public |
A Python SOCKS module
|
2025-04-22 |
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google-cloud-sdk
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public |
Command-line interface for Google Cloud Platform products and services
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2025-04-22 |
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bioconductor-cummerbund
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public |
Analysis, exploration, manipulation, and visualization of Cufflinks high-throughput sequencing data.
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2025-04-22 |
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igdiscover
|
public |
Analyze antibody repertoires and discover new V genes
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2025-04-22 |
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r-coloc
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public |
Performs the colocalisation tests described in Plagnol et al (2009) <doi:10.1093/biostatistics/kxn039>, Wallace et al (2013) <doi:10.1002/gepi.21765> and Giambartolomei et al (2013) <doi:10.1371/journal.pgen.1004383>.
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2025-04-22 |
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r-bma
|
public |
Package for Bayesian model averaging and variable selection for linear models, generalized linear models and survival models (cox regression).
|
2025-04-22 |
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bcl2fastq-nextseq
|
public |
NextSeq .bcl Conversion
|
2025-04-22 |
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py2bit
|
public |
A package for accessing 2bit files using lib2bit
|
2025-04-22 |
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r-leaps
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public |
No Summary
|
2025-04-22 |
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r-inline
|
public |
Functionality to dynamically define R functions and S4 methods with inlined C, C++ or Fortran code supporting .C and .Call calling conventions.
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2025-04-22 |
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r-qqman
|
public |
Create Q-Q and manhattan plots for GWAS data from PLINK results.
|
2025-04-22 |
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prokka
|
public |
Rapid annotation of prokaryotic genomes
|
2025-04-22 |
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data_hacks
|
public |
Command line utilities for data analysis.
|
2025-04-22 |
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r-fastcluster
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public |
This is a two-in-one package which provides interfaces to both R and Python. It implements fast hierarchical, agglomerative clustering routines. Part of the functionality is designed as drop-in replacement for existing routines: linkage() in the SciPy package 'scipy.cluster.hierarchy', hclust() in R's 'stats' package, and the 'flashClust' package. It provides the same functionality with the benefit of a much faster implementation. Moreover, there are memory-saving routines for clustering of vector data, which go beyond what the existing packages provide. For information on how to install the Python files, see the file INSTALL in the source distribution.
|
2025-04-22 |
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tbl2asn
|
public |
tbl2asn is a program that automates the creation of sequence records for submission to GenBank
|
2025-04-22 |
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cosi2
|
public |
cosi2 is an efficient coalescent simulator with support for selection, population structure, variable recombination rates, and gene conversion. It supports exact and approximate simulation modes.
|
2025-04-22 |
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nanocall
|
public |
An Oxford Nanopore Basecaller
|
2025-04-22 |
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detonate
|
public |
DETONATE (DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation) consists of two component packages, RSEM-EVAL and REF-EVAL.
|
2025-04-22 |
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cofold
|
public |
An RNA secondary structure prediction method that takes co-transcriptional folding into account.
|
2025-04-22 |
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pyalveo
|
public |
A Python library for interfacing with the Alveo API
|
2025-04-22 |
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transabyss
|
public |
de novo assembly of RNA-Seq data using ABySS
|
2025-04-22 |
