|
stringtie
|
public |
StringTie employs efficient algorithms for transcript structure recovery and abundance estimation from bulk RNA-Seq reads aligned to a reference genome.
|
2025-08-11 |
|
spectral_hk
|
public |
No Summary
|
2025-08-11 |
|
seqan_tcoffee
|
public |
SeqAn::T-Coffee - Multiple Sequence Alignment
|
2025-08-11 |
|
karect
|
public |
Read error correction tool based on multiple alignment.
|
2025-08-10 |
|
svmlight
|
public |
SVMLight Library by Thorsten Joachim
|
2025-08-10 |
|
kronik
|
public |
No Summary
|
2025-08-10 |
|
megahit
|
public |
MEGAHIT: An ultra-fast single-node solution for large and complex
metagenomics assembly via succinct de Bruijn graph
|
2025-08-10 |
|
pybigwig
|
public |
A python extension written in C for quick access to bigWig files.
|
2025-08-10 |
|
biofluff
|
public |
Exploratory analysis and visualization of high-throughput sequencing data
|
2025-08-10 |
|
ir
|
public |
Program for Calculating the Repetitiveness of DNA Sequences
|
2025-08-10 |
|
sts-smctc
|
public |
A C++ template class library for the efficient and convenient implementation of very general Sequential Monte Carlo algorithms.
|
2025-08-10 |
|
kallisto
|
public |
Quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads.
|
2025-08-10 |
|
ucsc-paratestjob
|
public |
Version 12.18.
|
2025-08-10 |
|
bwameth
|
public |
A fast and accurate aligner of BS-seq reads.
|
2025-08-09 |
|
perl-specio
|
public |
Type constraints and coercions for Perl
|
2025-08-09 |
|
sourmash
|
public |
Quickly search, compare, and analyze genomic and metagenomic data sets.
|
2025-08-07 |
|
gotohscan
|
public |
A search tool that finds shorter sequences (usually genes) in large database sequences (chromosomes, genomes, ..) by computing all semi-global alignments.
|
2025-08-07 |
|
bismark
|
public |
Bismark is a program to map bisulfite treated sequencing reads to a genome of interest and perform methylation calls in a single step. The output can be easily imported into a genome viewer, such as SeqMonk, and enables a researcher to analyse the methylation levels of their samples straight away.
|
2025-08-06 |
|
razers3
|
public |
RazerS 3 - Faster, fully sensitive read mapping
|
2025-08-05 |
|
rseg
|
public |
The RSEG software package is used to analyze ChIP-Seq data, especially for identifying genomic regions and their boundaries marked by diffusive histone modification markers, such as H3K36me3 and H3K27me3.
|
2025-08-05 |
|
fastani
|
public |
FastANI is developed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI).
|
2025-08-05 |
|
mash
|
public |
Fast sequence distance estimator that uses MinHash
|
2025-08-05 |
|
mason
|
public |
Mason is a collection of tools for the simulation of biological sequences.
|
2025-08-05 |
|
yara
|
public |
Yara is an exact tool for aligning DNA sequencing reads to reference genomes.
|
2025-08-05 |
|
dinopy
|
public |
DNA input and output library for Python and Cython. Includes reader and writer for FASTA and FASTQ files, support for samtools faidx files, and generators for solid and gapped q-grams (k-mers).
|
2025-08-05 |
