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mapdia
|
public |
Performs essential data preprocessing, including novel retention time-based normalization method and a sequence of peptide/fragment selection steps, and more importantly, hierarchical model-based statistical significance analysis for multi-group comparisons under representative experimental designs.
|
2025-08-14 |
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mea
|
public |
Mea was developed as part of the lab class "Bioinformatik von RNA- und Proteinstrukturen (Praktikum, Modul 10-202-2208)". The package predicts maximum expected accuracy (MEA) RNA secondary structures from dot plots of RNAs while correcting the score in dependence of base pair span. Furthermore, it provides tools to evaluate predictions and optimize parameters.
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2025-08-14 |
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livekraken
|
public |
LiveKraken is a real-time metagenomic classifier for Illumina sequencing data.
|
2025-08-14 |
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bioconductor-survcomp
|
public |
Performance Assessment and Comparison for Survival Analysis
|
2025-08-12 |
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phylip
|
public |
Package of programs for inferring phylogenies
|
2025-08-12 |
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gustaf
|
public |
Gustaf is a tool primarily designed for multi-split mapping of sequencing reads.
|
2025-08-12 |
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kraken-ea
|
public |
Kraken is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies. This is a modified version allowing for splitting of fastq files based on read classifications.
|
2025-08-11 |
|
perl-test-script
|
public |
Basic cross-platform tests for scripts
|
2025-08-11 |
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blast
|
public |
BLAST+ is a new suite of BLAST tools that utilizes the NCBI C++ Toolkit.
|
2025-08-11 |
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stringtie
|
public |
StringTie employs efficient algorithms for transcript structure recovery and abundance estimation from bulk RNA-Seq reads aligned to a reference genome.
|
2025-08-11 |
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spectral_hk
|
public |
No Summary
|
2025-08-11 |
|
seqan_tcoffee
|
public |
SeqAn::T-Coffee - Multiple Sequence Alignment
|
2025-08-11 |
|
karect
|
public |
Read error correction tool based on multiple alignment.
|
2025-08-10 |
|
svmlight
|
public |
SVMLight Library by Thorsten Joachim
|
2025-08-10 |
|
kronik
|
public |
No Summary
|
2025-08-10 |
|
megahit
|
public |
MEGAHIT: An ultra-fast single-node solution for large and complex
metagenomics assembly via succinct de Bruijn graph
|
2025-08-10 |
|
pybigwig
|
public |
A python extension written in C for quick access to bigWig files.
|
2025-08-10 |
|
biofluff
|
public |
Exploratory analysis and visualization of high-throughput sequencing data
|
2025-08-10 |
|
ir
|
public |
Program for Calculating the Repetitiveness of DNA Sequences
|
2025-08-10 |
|
sts-smctc
|
public |
A C++ template class library for the efficient and convenient implementation of very general Sequential Monte Carlo algorithms.
|
2025-08-10 |
|
kallisto
|
public |
Quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads.
|
2025-08-10 |
|
ucsc-paratestjob
|
public |
Version 12.18.
|
2025-08-10 |
|
bwameth
|
public |
A fast and accurate aligner of BS-seq reads.
|
2025-08-09 |
|
sourmash
|
public |
Quickly search, compare, and analyze genomic and metagenomic data sets.
|
2025-08-07 |
|
gotohscan
|
public |
A search tool that finds shorter sequences (usually genes) in large database sequences (chromosomes, genomes, ..) by computing all semi-global alignments.
|
2025-08-07 |
