| Package Name | Access | Summary | Updated |
|---|---|---|---|
| cyvcf2 | public | A cython wrapper around htslib built for fast parsing of Variant Call Format (VCF) files. | 2025-10-09 |
| b2btools | public | The bio2Byte software suite to predict protein biophysical properties | 2025-10-09 |
| commet | public | Comparing and combining multiple metagenomic datasets | 2025-10-09 |
| atol-qc-raw-ont | public | Run read QC on ONT reads. | 2025-10-09 |
| sorted_nearest | public | Find nearest interval. | 2025-10-09 |
| pmmrcalculator | public | A small python tool to calculate pairwise mismatch rate between all individuals in an EigenStrat dataset. | 2025-10-09 |
| bioconda-repodata-patches | public | Generate tweaks to index metadata, hosted separately from anaconda.org index. | 2025-10-09 |
| genesplicer | public | No Summary | 2025-10-08 |
| python-bioext | public | A few handy bioinformatics tools not already in BioPython. | 2025-10-08 |
| sdeper | public | Spatial Deconvolution method with Platform Effect Removal | 2025-10-08 |
| bifidoannotator | public | Fine-grained annotation of bifidobacterial enzymes involved in human-milk glycan (HMG) utilization | 2025-10-08 |
| humanfilt | public | WGS human-read filtering with auto-downloaded human references | 2025-10-08 |
| regain-cli | public | Bayesian-network pipeline for ARG/virulence co-occurrence analysis. | 2025-10-08 |
| transtermhp | public | TransTermHP finds rho-independent transcription terminators in bacterial genomes | 2025-10-08 |
| atol-qc-raw-shortread | public | Run short read QC on Hi-C or other Illumina reads. | 2025-10-08 |
| sift4g | public | SIFT 4G is a faster version of SIFT that enables us to scale up and provide SIFT predictions for more organisms. | 2025-10-08 |
| busco | public | Assessment of assembly completeness using Universal Single Copy Orthologs. | 2025-10-08 |
| python-msgpack | public | It's like JSON. But fast and small. | 2025-10-08 |
| quickmirseq | public | A pipeline for fast and accurate quantification of both known miRNAs and isomiRs by joint processing multiple samples | 2025-10-08 |
| mehari | public | VEP-like tool for sequence ontology and HGVS annotation of VCF files written in Rust. | 2025-10-08 |
| funannotate | public | funannotate: eukaryotic genome annotation pipeline | 2025-10-08 |
| deconveil | public | An extension of PyDESeq2/DESeq2 designed to account for genome aneuploidy. | 2025-10-08 |
| flexynesis | public | A deep-learning-based multi-omics bulk sequencing data integration suite with a focus on (pre-)clinical endpoint prediction. | 2025-10-08 |
| fastoma | public | FastOMA - a package to infer orthology information among proteomes. | 2025-10-08 |
| cogent3 | public | COmparative GENomics Toolkit 3: genomic sequence analysis within notebooks or on compute systems with 1000s of CPUs. | 2025-10-08 |
