| Package Name | Access | Summary | Updated |
|---|---|---|---|
| bioconductor-seqtools | public | Analysis of nucleotide, sequence and quality content on fastq files | 2025-04-29 |
| nim-abif | public | Parse ABIF files from the command line | 2025-04-29 |
| micom | public | Microbial community modeling based on cobrapy. | 2025-04-29 |
| reframed | public | Metabolic modeling package. | 2025-04-29 |
| plasmidcommunity | public | Klebsiella pneumoniae Plasmid Classification, Assignment, and Transmission Risk Prediction | 2025-04-29 |
| pandaseq | public | No Summary | 2025-04-29 |
| fastq-filter | public | A fast FASTQ filter program. | 2025-04-29 |
| quantms-rescoring | public | PSM rescoring python package with scripts and helpers for the quantms workflow | 2025-04-29 |
| gecode | public | Generic constraint development environment | 2025-04-29 |
| gambitcore | public | Tool for rapid taxonomic identification of microbial pathogens | 2025-04-29 |
| taxonkit | public | A Cross-platform and Efficient NCBI Taxonomy Toolkit | 2025-04-29 |
| parascopy | public | Calling paralog-specific copy number and sequence variants in duplicated genes using short-read whole-genome sequencing. | 2025-04-28 |
| checkqc | public | A simple program to parse Illumina NGS data and check it for quality criteria. | 2025-04-28 |
| pepsirf | public | Peptide-based Serological Immune Response Framework. | 2025-04-27 |
| ice-cream | public | ICEcream: Integrative and Conjugative Elements Classification and gRaphical gEne Arrangement Method. | 2025-04-27 |
| tidyp | public | Program for cleaning up and validating HTML | 2025-04-27 |
| bioconductor-glmgampoi | public | Fit a Gamma-Poisson Generalized Linear Model | 2025-04-27 |
| melon | public | Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes | 2025-04-27 |
| recentrifuge | public | Robust comparative analysis and contamination removal for metagenomics. | 2025-04-27 |
| bubblegun | public | BubbleGun is a tool for detecting bubbles and superbubbles in GFA graphs, and reports them and their nested structures. | 2025-04-27 |
| netsyn | public | NetSyn is a tool to detect conserved genomic contexts (i.e. synteny conservation) among a list of protein targets. | 2025-04-27 |
| eukfinder | public | Eukfinder is a tool for detecting eukaryotic sequences in metagenomic data. | 2025-04-26 |
| jvarkit | public | Java utilities for Bioinformatics. | 2025-04-25 |
| esme_netcdf-fortran_psmpi_5_10_0 | public | NetCDF-Fortran - netCDF interface for Fortran | 2025-04-25 |
| esme_psmpi_5_10_0 | public | Earth System Modelling Environment (ESME) - A bundle for scientific computing packages for climate modelling with MPI support. | 2025-04-25 |
