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bioconductor-alphabeta
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public |
Computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants
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2024-12-15 |
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bioconductor-bus
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public |
Gene network reconstruction
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2024-12-15 |
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bioconductor-pcan
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public |
Phenotype Consensus ANalysis (PCAN)
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2024-12-15 |
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hmmcopy
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public |
C++ based programs for analyzing BAM files and preparing read counts -- used with bioconductor-hmmcopy
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2024-12-15 |
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bioconductor-depinfer
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public |
Inferring tumor-specific cancer dependencies through integrating ex-vivo drug response assays and drug-protein profiling
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2024-12-15 |
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splicemap
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public |
Detects splice junctions from RNA-seq data. This method does not depend on any existing annotation of gene structures and is capable of finding novel splice junctions with high sensitivity and specificity. It can handle long reads (50–100 nt) and can exploit paired-read information to improve mapping accuracy.
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2024-12-15 |
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tefinder
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public |
Programs for transposable element search and annotation in large eukaryotic genome sequence.
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2024-12-15 |
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bioconductor-scthi
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public |
Indentification of significantly activated ligand-receptor interactions across clusters of cells from single-cell RNA sequencing data
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2024-12-15 |
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bioconductor-scshapes
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public |
A Statistical Framework for Modeling and Identifying Differential Distributions in Single-cell RNA-sequencing Data
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2024-12-15 |
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bioconductor-dcgsa
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public |
Distance-correlation based Gene Set Analysis for longitudinal gene expression profiles
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2024-12-15 |
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bioconductor-tpp2d
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public |
Detection of ligand-protein interactions from 2D thermal profiles (DLPTP)
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2024-12-15 |
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vadr
|
public |
Viral Annotation DefineR - classification and annotation of viral sequences based on RefSeq annotation
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2024-12-15 |
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nohuman
|
public |
Remove human reads from a sequencing run
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2024-12-15 |
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bioconductor-decoupler
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public |
decoupleR: Ensemble of computational methods to infer biological activities from omics data
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2024-12-15 |
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bioconductor-biodb
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public |
biodb, a library and a development framework for connecting to chemical and biological databases
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2024-12-15 |
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bioconductor-mixomics
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public |
Omics Data Integration Project
|
2024-12-15 |
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phyloacc
|
public |
Bayesian estimation of substitution rate shifts in non-coding regions
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2024-12-15 |
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bioconductor-magrene
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public |
Motif Analysis In Gene Regulatory Networks
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2024-12-15 |
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bioconductor-brendadb
|
public |
The BRENDA Enzyme Database
|
2024-12-15 |
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bioconductor-pengls
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public |
Fit Penalised Generalised Least Squares models
|
2024-12-15 |
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bioconductor-abseqr
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public |
Reporting and data analysis functionalities for Rep-Seq datasets of antibody libraries
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2024-12-15 |
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ganon
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public |
ganon2 classifies genomic sequences against large sets of references efficiently,
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2024-12-15 |
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metabinkit
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public |
Set of programs to perform taxonomic binning.
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2024-12-15 |
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repeatscout
|
public |
De novo identification of repeat families in large genomes.
|
2024-12-15 |
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bioconductor-scfa
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public |
SCFA: Subtyping via Consensus Factor Analysis
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2024-12-15 |
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hs-blastn
|
public |
hs-blastn, a fast and accurate nucleotide-nucleotide sequences aligner.
|
2024-12-14 |
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bioconductor-cytoglmm
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public |
Conditional Differential Analysis for Flow and Mass Cytometry Experiments
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2024-12-14 |
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localhgt
|
public |
Tools for dealing with SAM, BAM and CRAM files
|
2024-12-14 |
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bioconductor-synlet
|
public |
Hits Selection for Synthetic Lethal RNAi Screen Data
|
2024-12-14 |
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perl-par-packer
|
public |
No Summary
|
2024-12-14 |
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bioconductor-desingle
|
public |
DEsingle for detecting three types of differential expression in single-cell RNA-seq data
|
2024-12-14 |
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bioconductor-compass
|
public |
Combinatorial Polyfunctionality Analysis of Single Cells
|
2024-12-14 |
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bioconductor-nparc
|
public |
Non-parametric analysis of response curves for thermal proteome profiling experiments
|
2024-12-14 |
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pytrimal
|
public |
Cython bindings and Python interface to trimAl, a tool for automated alignment trimming.
|
2024-12-14 |
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psascan
|
public |
A parallel external memory suffix array construction algorithm
|
2024-12-14 |
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bioconductor-kinswingr
|
public |
KinSwingR: network-based kinase activity prediction
|
2024-12-14 |
|
bioconductor-mbcb
|
public |
MBCB (Model-based Background Correction for Beadarray)
|
2024-12-14 |
|
pyopal
|
public |
Cython bindings and Python interface to Opal, a SIMD-accelerated pairwise aligner.
|
2024-12-14 |
|
nextpolish
|
public |
Fast and accurately polish the genome generated by long reads
|
2024-12-14 |
|
bioconductor-ctsge
|
public |
Clustering of Time Series Gene Expression data
|
2024-12-14 |
|
andi
|
public |
Efficient Estimation of Evolutionary Distances
|
2024-12-14 |
|
bitmapperbs
|
public |
BitMapperBS: a fast and accurate read aligner for whole-genome bisulfite sequencing
|
2024-12-14 |
|
bioconductor-absseq
|
public |
ABSSeq: a new RNA-Seq analysis method based on modelling absolute expression differences
|
2024-12-14 |
|
genericrepeatfinder
|
public |
Generic Repeat Finder (GRF).
|
2024-12-14 |
|
r-scbio
|
public |
Cellular population mapping (CPM) a deconvolution algorithm in which single-cell genomics is required in only one or a few samples, where in other samples of the same tissue, only bulk genomics is measured and the underlying fine resolution cellular heterogeneity is inferred.
|
2024-12-14 |
|
bioconductor-massspecwavelet
|
public |
Peak Detection for Mass Spectrometry data using wavelet-based algorithms
|
2024-12-14 |
|
skder
|
public |
skDER & CiDDER: efficient & high-resolution dereplication methods for microbial genomes
|
2024-12-14 |
|
bioconductor-oppti
|
public |
Outlier Protein and Phosphosite Target Identifier
|
2024-12-14 |
|
bioconductor-qubic
|
public |
An R package for qualitative biclustering in support of gene co-expression analyses
|
2024-12-14 |
|
r-pscbs
|
public |
Segmentation of allele-specific DNA copy number data and detection of regions with abnormal copy number within each parental chromosome. Both tumor-normal paired and tumor-only analyses are supported.
|
2024-12-14 |
