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bioconductor-hireewas
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public |
Detection of cell-type-specific risk-CpG sites in epigenome-wide association studies
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2024-12-17 |
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3seq
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public |
3SEQ tests all sequence triplets in an alignment for a mosaic recombination signal.
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2024-12-17 |
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bioconductor-eds
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public |
eds: Low-level reader for Alevin EDS format
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2024-12-17 |
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bioconductor-dnabarcodes
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public |
A tool for creating and analysing DNA barcodes used in Next Generation Sequencing multiplexing experiments
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2024-12-16 |
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bioconductor-bufferedmatrix
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public |
A matrix data storage object held in temporary files
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2024-12-16 |
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bioconductor-twoddpcr
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public |
Classify 2-d Droplet Digital PCR (ddPCR) data and quantify the number of starting molecules
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2024-12-16 |
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survindel2
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public |
A CNV caller for Illumina paired-end WGS data.
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2024-12-16 |
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bioconductor-exploremodelmatrix
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public |
Graphical Exploration of Design Matrices
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2024-12-16 |
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bioconductor-sevenbridges
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public |
Seven Bridges Platform API Client and Common Workflow Language Tool Builder in R
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2024-12-16 |
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bioconductor-viper
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public |
Virtual Inference of Protein-activity by Enriched Regulon analysis
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2024-12-16 |
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rhocall
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public |
Call regions of homozygosity and make tentative UPD calls.
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2024-12-16 |
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pbfusion
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public |
Fusion gene detection tool for PacBio Iso-Seq data
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2024-12-16 |
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bioconductor-spem
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public |
S-system parameter estimation method
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2024-12-16 |
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bioconductor-geneexpressionsignature
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public |
Gene Expression Signature based Similarity Metric
|
2024-12-16 |
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bioconductor-affycomp
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public |
Graphics Toolbox for Assessment of Affymetrix Expression Measures
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2024-12-16 |
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bioconductor-cghbase
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public |
CGHbase: Base functions and classes for arrayCGH data analysis.
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2024-12-16 |
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bioconductor-convert
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public |
Convert Microarray Data Objects
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2024-12-16 |
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r-bisquerna
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public |
Provides tools to accurately estimate cell type abundances from heterogeneous bulk expression.
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2024-12-16 |
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ale-core
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public |
ALE: Assembly Likelihood Estimator. Core C implemented scoring programs only without supplementary plotting scripts.
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2024-12-16 |
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hifiasm
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public |
Haplotype-resolved assembler for accurate Hifi reads.
|
2024-12-16 |
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ivar
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public |
iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.
|
2024-12-16 |
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bioconductor-plgem
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public |
Detect differential expression in microarray and proteomics datasets with the Power Law Global Error Model (PLGEM)
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2024-12-16 |
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bioconductor-bluster
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public |
Clustering Algorithms for Bioconductor
|
2024-12-16 |
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bioconductor-annotationtools
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public |
Annotate microarrays and perform cross-species gene expression analyses using flat file databases
|
2024-12-16 |
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perl-moosex-role-withoverloading
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public |
(DEPRECATED) Roles which support overloading
|
2024-12-16 |
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bioconductor-randpack
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public |
Randomization routines for Clinical Trials
|
2024-12-16 |
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perl-statistics-r
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public |
No Summary
|
2024-12-16 |
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duplomap
|
public |
Tool designed to improve precision and recall of long-read alignments in segmental duplications.
|
2024-12-16 |
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igphyml
|
public |
IgPhyML is a program designed to build phylogenetic trees and test evolutionary hypotheses regarding B cell affinity maturation.
|
2024-12-16 |
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bioconductor-gsealm
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public |
Linear Model Toolset for Gene Set Enrichment Analysis
|
2024-12-16 |
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contammix
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public |
estimation of mtDNA contamination from a set of potential contaminant genomes.
|
2024-12-16 |
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bioconductor-massir
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public |
massiR: MicroArray Sample Sex Identifier
|
2024-12-16 |
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bioconductor-biodbchebi
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public |
biodbChebi, a library for connecting to the ChEBI Database
|
2024-12-16 |
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bioconductor-spktools
|
public |
Methods for Spike-in Arrays
|
2024-12-16 |
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bioconductor-biodbncbi
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public |
biodbNcbi, a library for connecting to NCBI Databases.
|
2024-12-16 |
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bioconductor-methped
|
public |
A DNA methylation classifier tool for the identification of pediatric brain tumor subtypes
|
2024-12-16 |
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bioconductor-biodbnci
|
public |
biodbNci, a library for connecting to biodbNci, a library for connecting to the National Cancer Institute (USA) CACTUS Database
|
2024-12-16 |
|
bioconductor-biodbuniprot
|
public |
biodbUniprot, a library for connecting to the Uniprot Database
|
2024-12-16 |
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bioconductor-noiseq
|
public |
Exploratory analysis and differential expression for RNA-seq data
|
2024-12-16 |
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bioconductor-biodbhmdb
|
public |
biodbHmdb, a library for connecting to the HMDB Database
|
2024-12-16 |
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bioconductor-factdesign
|
public |
Factorial designed microarray experiment analysis
|
2024-12-16 |
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bioconductor-michip
|
public |
MiChip Parsing and Summarizing Functions
|
2024-12-16 |
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bioconductor-sigsquared
|
public |
Gene signature generation for functionally validated signaling pathways
|
2024-12-16 |
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bioconductor-masigpro
|
public |
Significant Gene Expression Profile Differences in Time Course Gene Expression Data
|
2024-12-16 |
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bioconductor-qusage
|
public |
qusage: Quantitative Set Analysis for Gene Expression
|
2024-12-16 |
|
emvc-2
|
public |
An efficient SNV variant caller based on the expectation maximization algorithm.
|
2024-12-16 |
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bioconductor-acme
|
public |
Algorithms for Calculating Microarray Enrichment (ACME)
|
2024-12-16 |
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bioconductor-dyebias
|
public |
The GASSCO method for correcting for slide-dependent gene-specific dye bias
|
2024-12-16 |
|
r-cdseq
|
public |
Estimate cell-type-specific gene expression profiles and sample-specific cell-type proportions simultaneously using bulk sequencing data. Kang et al. (2019) <doi:10.1371/journal.pcbi.1007510>.
|
2024-12-16 |
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bioconductor-cma
|
public |
Synthesis of microarray-based classification
|
2024-12-16 |
