| Package Name | Access | Summary | Updated |
|---|---|---|---|
| madre | public | Strain-level metagenomic classification with Metagenome Assembly driven Database Reduction approach. | 2025-06-18 |
| perl-ipc-cmd | public | A cross platform way of running (interactive) commandline programs. | 2025-06-18 |
| damasker | public | DAMASKER: Module to determine where repeats are and make soft-masks of said | 2025-06-18 |
| fastp | public | A ultra-fast FASTQ preprocessor with full features (QC/adapters/trimming/filtering/splitting...). | 2025-06-18 |
| panacus | public | panacus is a tool for computing counting statistics for GFA files. | 2025-06-18 |
| reffinder | public | refFinder: Fast Lightweighttool for extracting nucleotides from fastafile using streams | 2025-06-18 |
| faqcs | public | Quality Control of Next Generation Sequencing Data. | 2025-06-17 |
| covtobed | public | covtobed - generate a BED file of covered regions from a BAM file. | 2025-06-17 |
| trf | public | Tandem Repeats Finder is a program to locate and display tandem repeats in DNA sequences. | 2025-06-17 |
| vcf2pandas | public | Package to convert a VCF into a pandas dataframe. | 2025-06-17 |
| lusstr | public | Tool for converting NGS sequence data of forensic STR loci to various annotation styles | 2025-06-17 |
| tasmanian-mismatch | public | Tasmanian tool to analyze mismatches at read and position in high throughput sequencing data. | 2025-06-17 |
| crabs | public | Crabs (Creating Reference databases for Amplicon-Based Sequencing) is a program to download and curate reference databases for eDNA metabarcoding analyses. | 2025-06-17 |
| sphae | public | Phage toolkit | 2025-06-17 |
| mashpit | public | Sketch-based surveillance platform. | 2025-06-16 |
| defense-finder | public | Defense Finder: allow for a systematic search of all known anti-phage systems. | 2025-06-16 |
| el_gato | public | Perform Legionella pneumophila Sequence Based Typing (SBT) from short reads or assemblies. | 2025-06-16 |
| barcodeforge | public | A CLI tool for generating pathogen-specific barcodes for Freyja. | 2025-06-16 |
| seq2squiggle | public | End-to-end simulation of nanopore sequencing signals with feed-forward transformers | 2025-06-16 |
| mappy | public | Minimap2 Python binding | 2025-06-16 |
| dicey | public | In-silico PCR and variant primer design. | 2025-06-15 |
| rcorrector | public | Rcorrector (RNA-seq error CORRECTOR) is a kmer-based error correction method for RNA-seq data. Rcorrector can also be applied to other type of sequencing data where the read coverage is non-uniform, such as single-cell sequencing. | 2025-06-15 |
| minimap2 | public | A versatile pairwise aligner for genomic and spliced nucleotide sequences. | 2025-06-15 |
| abismal | public | abismal is a fast and memory-efficient mapper for short bisulfite sequencing reads. | 2025-06-15 |
| haphic | public | HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data | 2025-06-15 |
