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debarcer
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public |
A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes.
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2023-06-16 |
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eigenstratdatabasetools
|
public |
A set of tools to compare and manipulate the contents of EingenStrat databases, and to calculate SNP coverage statistics in such databases.
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2023-06-16 |
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psm_fragments
|
public |
PSM validation against ion fragmentation
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2023-06-16 |
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pan-plaster
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public |
Plaster is a program for quick linear pangenome construction.
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2023-06-16 |
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scvi-tools
|
public |
Deep probabilistic analysis of single-cell omics data.
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2023-06-16 |
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deepnog
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public |
Deep learning tool for protein orthologous group assignment
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2023-06-16 |
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treecluster
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public |
Identify clusters in phylogenetic trees based on a distance threshold and other constraints
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2023-06-16 |
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biotransformer
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public |
Predicts small molecule metabolism.
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2023-06-16 |
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hamip
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public |
HaMiP is A scalable, accurate, and efficient solution for hydroxymethylation analysis of CMS-IP data.
|
2023-06-16 |
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sidr
|
public |
Sequence Idenification using Decision tRees; a tool to classify DNA reads using machine learning models.
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2023-06-16 |
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cmip
|
public |
CMIP Classical Molecular Interaction Potentials
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2023-06-16 |
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clinker
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public |
Clinker is a bioinformatics pipeline that generates a superTranscriptome from popular fusion finder outputs (JAFFA, tophatFusion, SOAP, deFUSE, Pizzly, etc), that can be then be either viewed in genome viewers such as IGV or through the included plotting feature developed with GViz.
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2023-06-16 |
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igblast-parser
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public |
Parser of Igblast results into a csv file
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2023-06-16 |
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grafimo
|
public |
GRAFIMO, GRAph-based Finding of Indivividual Motif Occurrences
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2023-06-16 |
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pydownsampler
|
public |
A Python package for downsampling sequence alignment files
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2023-06-16 |
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coconet-binning
|
public |
A contig binning tool from viral metagenomes
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2023-06-16 |
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genomic_regions
|
public |
Consistently handle genomic regions
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2023-06-16 |
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mnnpy
|
public |
Mutual nearest neighbors correction in python.
|
2023-06-16 |
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omero-py
|
public |
Client library offering helper methods to access an OMERO server.
|
2023-06-16 |
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cluster_vcf_records
|
public |
Package to cluster VCF records. For use by gramtools and minos
|
2023-06-16 |
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pathracer
|
public |
PathRacer is a tool for alignment of profile HMM against assembly graph.
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2023-06-16 |
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metapop
|
public |
A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations
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2023-06-16 |
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ragtag
|
public |
Fast reference-guided genome assembly scaffolding
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2023-06-16 |
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pgdspider
|
public |
An automated data conversion tool for connecting population genetics and genomics programs
|
2023-06-16 |
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jcast
|
public |
Jcast retrieves splice junction information and translates into amino acids
|
2023-06-16 |
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wlogdate
|
public |
An implementation of the wLogDate algorithm for dating phylogenetic trees
|
2023-06-16 |
|
bacphlip
|
public |
A Random Forest classifier to predict bacteriophage lifestyle
|
2023-06-16 |
|
pyclone
|
public |
PyClone: A probabilistic model for inferring clonal population structure from deep NGS sequencing.
|
2023-06-16 |
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pydp
|
public |
PyDP is library for implementing Dirichlet Process mixture models (DPMM)
|
2023-06-16 |
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isaac4
|
public |
Ultra-fast whole-genome alignment for Illumina sequencing platforms.
|
2023-06-16 |
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metatree
|
public |
Visualisation of polyphyletic groups between phylogenetic trees to a reference tree.
|
2023-06-16 |
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catch_chimera
|
public |
CATCh is an ensemble classifier for chimera detection in 16S rRNA sequencing studies. The present bioconda recipe installs the 'CATCh_v1.run' binary, as suggested on authors website.
|
2023-06-16 |
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fastg2protlib
|
public |
FASTG sequences to a protein library.
|
2023-06-16 |
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opentargets-urlzsource
|
public |
File and url handling
|
2023-06-16 |
|
macse
|
public |
MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons.
|
2023-06-16 |
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scapp
|
public |
Plasmid assembly in metagenomes
|
2023-06-16 |
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cellrank-krylov
|
public |
CellRank for directed single-cell fate mapping
|
2023-06-16 |
|
hpsuissero
|
public |
Rapid Haemophilus parasuis serotyping pipeline for Nanopore Data
|
2023-06-16 |
|
chisel
|
public |
Copy-number Haplotype Inference in Single-cell by Evolutionary Links
|
2023-06-16 |
|
bioconda2biocontainer
|
public |
BioContainers API client: find biocontainer images for Bioconda packages
|
2023-06-16 |
|
jasminesv
|
public |
Software for merging structural variants between individuals
|
2023-06-16 |
|
bmge
|
public |
BMGE (Block Mapping and Gathering with Entropy) is a program that selects
regions in a multiple sequence alignment that are suited for phylogenetic inference.
|
2023-06-16 |
|
ldblockshow
|
public |
a tool for showing linkage disequilibrium heatmaps from variant call format (VCF) files
|
2023-06-16 |
|
tbox-scan
|
public |
tbox-scan is for detecting and classifying T-boxes in DNA sequences.
|
2023-06-16 |
|
plasclass
|
public |
Classification of plasmid sequences
|
2023-06-16 |
|
ngsep
|
public |
NGSEP - Next Generation Sequencing Experience Platform
|
2023-06-16 |
|
cellrank
|
public |
CellRank for directed single-cell fate mapping
|
2023-06-16 |
|
ssuissero
|
public |
Rapid Streptococcus suis serotyping pipeline for Nanopore Data
|
2023-06-16 |
|
mtglink
|
public |
MTG-link is a local assembly tool for linked-read data
|
2023-06-16 |
|
isonclust2
|
public |
De novo clustering of long transcriptomic reads
|
2023-06-16 |
