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deepaccess
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public |
A package for training and interpreting an ensemble of neural networks for chromatin accessibility
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2023-06-16 |
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codan
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public |
CDS prediction in eukaryotic transcripts.
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2023-06-16 |
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sscocaller
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public |
Haplotyping single-cell DNA sequenced gamete cells.
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2023-06-16 |
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bioconductor-conclus
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public |
ScRNA-seq Workflow CONCLUS - From CONsensus CLUSters To A Meaningful CONCLUSion
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2023-06-16 |
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dvorfs
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public |
DVORFS tool for mining endogenous viral elements
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2023-06-16 |
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bioconductor-scclassifr
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public |
Pretrained learning models for cell type prediction on single cell RNA-sequencing data
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2023-06-16 |
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bioconductor-trare
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public |
Transcriptional Rewiring
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2023-06-16 |
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bioconductor-mesh.eca.eg.db
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public |
Mapping table for Equus caballus Gene ID to MeSH
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2023-06-16 |
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gs-tama
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public |
Gene-Switch Transcriptome Annotation by Modular Algorithms
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2023-06-16 |
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lddt
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public |
A superposition-free score that evaluates local distance differences in a model compared to a reference structure.
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2023-06-16 |
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motulizer
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public |
making OTUs from genomes, and stats on them. and even core-genomes
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2023-06-16 |
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plotcritic
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public |
Python deployment tool for bespoke image curation projects, oriented toward scientific projects, especially genomic structural variation.
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2023-06-16 |
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zavolan-multiqc-plugins
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public |
MultiQC plugins for the Zavolan Lab@ University of Basel, Switzerland
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2023-06-16 |
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tin-score-calculation
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public |
Given a set of BAM files and a gene annotation BED file, calculates the Transcript Integrity Number (TIN) for each transcript.
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2023-06-16 |
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bellerophon
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public |
Filter reads that span a mapping junction, retaining the 5'-side.
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2023-06-16 |
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buildh
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public |
Build hydrogen atoms from a united-atom MD of lipids and calculate the order parameter.
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2023-06-16 |
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piemmer
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public |
A algorithm to simplify the input for principal component analysis
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2023-06-16 |
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magetab-curation-scripts
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public |
Perl-based scripts for ArrayExpress and Expression Atlas curation of MAGE-TAB files
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2023-06-16 |
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aptardi
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public |
aptardi is a tool that predicts polyA sites from RNA-Seq data and DNA sequence
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2023-06-16 |
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multiqc_sav
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public |
MultiQC plugin to visualize Illumina SAV plots
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2023-06-16 |
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proteomiqon-psmbasedquantification
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public |
The quantification tool was designed to allow label-free quantification as well as quantification of full metabolic labeled samples.
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2023-06-16 |
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proteomiqon-proteininference
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public |
MS-based shotgun proteomics estimates protein abundances using a proxy: peptides. The process of 'Protein Inference' is concerned with the mapping of identified peptides to the proteins they putatively originated from.
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2023-06-16 |
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proteomiqon-mzmltomzlite
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public |
The tool MzMLToMzLite allows to convert mzML files to mzLite files.
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2023-06-16 |
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mage-tab-merger
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public |
Utility scripts to merge SDRFs, condensed SDRFs and IDFs (MAGE-Tab) for meta-analysis and othe purposes.
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2023-06-16 |
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proteomiqon-peptidespectrummatching
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public |
Given raw an MS run in the mzLite format, this tool iterates across all MS/MS scans, determines precursor charge states and possible peptide spectrum matches using reimplementations of SEQUEST, Andromeda and XTandem.
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2023-06-16 |
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labrat
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public |
A package to quantify changes in alternative polyadenylation isoform abundance using RNAseq data
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2023-06-16 |
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proteomiqon-psmstatistics
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public |
The PSMStatistics tool utilizes semi supervised machine learning techniques to integrate search engine scores as well as the mentioned quality scores into one single consensus score.
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2023-06-16 |
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zgtf
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public |
gtf conversion utility.
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2023-06-16 |
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bionetcomp
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public |
BioNetComp: A Python package for biological network comparison from STRING database.
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2023-06-16 |
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alfa
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public |
A simple software to get a quick overview of features composing NGS dataset(s).
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2023-06-16 |
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xpore
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public |
xpore is a python package for Nanopore data analysis of differential RNA modifications.
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2023-06-16 |
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epimuller
|
public |
Visualize lineages overtime, with phylogentic context, based on viral genomes
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2023-06-16 |
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sodar-cli
|
public |
Command line interface to SODAR via REST API
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2023-06-16 |
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mirdeep-p2
|
public |
A fast and accurate tool for analyzing the miRNA transcriptome in plants
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2023-06-16 |
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chia-rep
|
public |
A package for measuring reproducibility of ChIA-PET data.
|
2023-06-16 |
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bleties
|
public |
BleTIES: Basic Long-read Enabled Toolkit for Interspersed DNA Elimination Studies
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2023-06-16 |
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proteomiqon-peptidedb
|
public |
The tool ProteomIQon.PeptideDB creates a peptide database in the SQLite format.
|
2023-06-16 |
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saspector
|
public |
A tool for analysis of missing regions in (bacterial) draft genomes.
|
2023-06-16 |
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agrvate
|
public |
Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.
|
2023-06-16 |
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staphopia-sccmec
|
public |
Predicts Staphylococcus aureus SCCmec type based on primers.
|
2023-06-16 |
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figaro
|
public |
An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters
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2023-06-16 |
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psap
|
public |
CLI interface for the PSAP classifier. PSAP implements a RandomForest approach to predict the probability of proteins to mediate protein phase separation (PPS).
|
2023-06-16 |
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riboloco
|
public |
Riboseq analysis
|
2023-06-16 |
|
nextclade_js
|
public |
SARS-CoV-2 genome clade assignment, mutation calling, and sequence quality checks (Javascript implementation)
|
2023-06-16 |
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ribocutter
|
public |
Design oligos to produce sgRNAs for abundant sequences in a fastq file
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2023-06-16 |
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fba
|
public |
Tools for single-cell feature barcoding analysis. Citation: Duan, et al (2021) <doi:10.1093/bioinformatics/btab375>.
|
2023-06-16 |
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noresm
|
public |
The Norwegian Earth System Model (NorESM) is a coupled climate model for simulating Earth’s climate system
|
2023-06-16 |
|
archer
|
public |
Pre-process amplicon data before running CLIMB workflows.
|
2023-06-16 |
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rnaprot
|
public |
Modelling RBP binding preferences to predict RPB binding sites
|
2023-06-16 |
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shiptv
|
public |
Generate a standalone HTML file with an interactive phylogenetic tree using PhyloCanvas
|
2023-06-16 |
