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pynteny
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public |
Multiple HMM - search via synteny structures in Python
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2023-06-18 |
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perl-bio-rna-barriers
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public |
Parse, query and manipulate output of Barriers
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2023-06-18 |
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perl-bio-rna-barmap
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public |
Parse and query BarMap mappings.
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2023-06-18 |
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perl-bio-rna-treekin
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public |
Classes for working with Treekin output.
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2023-06-18 |
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plmc
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public |
Inference of couplings in proteins and RNAs from sequence variation.
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2023-06-18 |
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genomics-data-index
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public |
Indexes genomics data (nucleotide variants, kmers, MLST) for fast querying of features.
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2023-06-18 |
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sga_ice
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public |
Iterative error correction of long 250 or 300 bp Illumina reads minimizes the total amount of erroneous reads, which improves contig assembly
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2023-06-18 |
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forwardgenomics
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public |
Forward Genomics is a framework to associate phenotypic differences between species to differences in their genomes
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2023-06-18 |
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gsea
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public |
Gene Set Enrichment Analysis (GSEA)
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2023-06-18 |
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pseudo-it
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public |
Reference-based genome assembly with iterative mapping
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2023-06-18 |
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biscot
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public |
Bionano SCaffolding Correction Tool
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2023-06-18 |
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gc-meox-tms
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public |
In-silico MeOX/TMS derivatization of chemical compounds.
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2023-06-18 |
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gorpipe
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public |
A query tool for working with sequence data based on a Genomic Ordered Relations (GOR)
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2023-06-18 |
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gor_pyspark
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public |
Python helper function for gor-spark
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2023-06-18 |
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targetscan
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public |
Search for predicted microRNA targets in mammals
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2023-06-18 |
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ciriquant
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public |
circular RNA quantification pipeline
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2023-06-18 |
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find_circ
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public |
Detect head-to-tail spliced (back-spliced) sequencing reads, indicative of circular RNA (circRNA) in RNA-seq data.
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2023-06-18 |
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circrna_finder
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public |
Scripts required for running the pipeline to find circular RNAs from RNA-seq data
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2023-06-18 |
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dcc
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public |
DCC is a python package intended to detect and quantify circRNAs with high specificity
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2023-06-18 |
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vechat
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public |
Correcting errors in noisy long reads using variation graphs
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2023-06-18 |
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m-party
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public |
Mining Protein dAtasets foR Targeted EnzYmes
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2023-06-18 |
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mge-cluster
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public |
A classification framework for mobile genetic elements (MGEs)
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2023-06-18 |
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freddie
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public |
Annotation-independent detection of splicing isoforms using RNA long-reads
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2023-06-18 |
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bioconductor-stdeconvolve
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public |
Reference-free Cell-Type Deconvolution of Multi-Cellular Spatially Resolved Transcriptomics Data
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2023-06-18 |
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strainflye
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public |
Pipeline for analyzing rare mutations in metagenomes assembled using long and accurate reads
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2023-06-18 |
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h5sparse
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public |
Scipy sparse matrix in HDF5.
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2023-06-18 |
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tb-ml
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public |
A simple tool for creating machine learning antimicrobial resistance prediction pipelines using Docker containers for M. tuberculosis.
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2023-06-18 |
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sashimi-py
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public |
This is an pure Python version of sashimi plot
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2023-06-18 |
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physiofit_data_manager
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public |
Handle data input management for physiofit4galaxy
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2023-06-18 |
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pyrovelocity
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public |
Probabilistic RNA velocity for cell fate uncertainty estimation
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2023-06-18 |
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trand
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public |
transcript event and distance
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2023-06-18 |
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pavfinder
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public |
PAVFinder is a Python package that detects structural variants from de novo assemblies.
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2023-06-18 |
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phist
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public |
Phage-Host Interaction Search Tool.
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2023-06-18 |
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pybmtools
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public |
A python extension written in C for quick access to DNA methylation BM files.
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2023-06-18 |
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phamb
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public |
phamb discovery approach used to isolate metagenome derived viromes and High-quality viral genomes
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2023-06-18 |
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vase
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public |
Variant Annotation, Segregation and Exclusion for family or cohort based rare-disease sequencing studies
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2023-06-18 |
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parse-vcf
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public |
Variant Call Format parser and convenience methods
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2023-06-18 |
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etoki
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public |
EToKi (Enterobase Tool Kit) includes methods related to Enterobase data analysis pipelines
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2023-06-18 |
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pango_aliasor
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public |
Pango lineage aliasing and dealiasing
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2023-06-18 |
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phiercc
|
public |
Hierarchical Clustering of cgMLST profiles
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2023-06-18 |
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hap-ibd
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public |
Hap-ibd Detects identity-by-descent (IBD) segments and homozygosity-by-descent (HBD) segments in phased genotype data.
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2023-06-18 |
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stag
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public |
A hierarchical taxonomic classifier for metagenomic sequences
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2023-06-18 |
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phip-stat
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public |
PhIP-seq analysis tools
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2023-06-18 |
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concoord
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public |
CONCOORD is a method to generate protein conformations around a known structure based on geometric restrictions.
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2023-06-18 |
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qhery
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public |
Identification of mutations in SARS-CoV-2 associated with resistance to treatment.
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2023-06-18 |
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mummer2circos
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public |
Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments
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2023-06-18 |
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htseq-clip
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public |
htseq-clip: a toolset for the analysis of eCLIP/iCLIP datasets
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2023-06-18 |
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bart
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public |
bart - a bacterial read type
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2023-06-18 |
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marvd2
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public |
Metagenomic Archaeal Virus Detector 2
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2023-06-18 |
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cartools
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public |
Coverage Analysis Report tool CAR tool is a tool for assessment of per base quality of NGS data.
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2023-06-18 |
