|
pyctv_taxonomy
|
public |
pyctv_taxonomy: download and use the ICTV Virus Metadata Resource
|
2023-06-18 |
|
milonga
|
public |
MiLongA - A snakemake workflow for Microbial Long-read Assembly
|
2023-06-18 |
|
drprg
|
public |
Drug resistance prediction with reference graphs
|
2023-06-18 |
|
pepsirf
|
public |
Peptide-based Serological Immune Response Framework
|
2023-06-18 |
|
bamstats
|
public |
A command line tool to compute mapping statistics from a BAM file
|
2023-06-18 |
|
viralflye
|
public |
viralFlye is a pipeline to recover high-quality viral genomes from long-read metagenomic sequencing.
|
2023-06-18 |
|
fastquast
|
public |
Fast and simple Quality Assessment Tool for Large Genomes
|
2023-06-18 |
|
quicksnp
|
public |
A python script to quickly build a Neighbor Joining tree using only a SNP distance matrix.
|
2023-06-18 |
|
read2tree
|
public |
Building phylogenetic trees directly from sequencing reads
|
2023-06-18 |
|
pyham
|
public |
A tool to analyse Hierarchical Orthologous Groups (HOGs)
|
2023-06-18 |
|
pastrami
|
public |
Pastrami is a novel, scalable computational algorithm for rapid human ancestry estimation
|
2023-06-18 |
|
lja
|
public |
La Jolla Assembler(LJA) - tool for genome assembly from PacBio HiFI reads based on de Bruijn graphs
|
2023-06-18 |
|
mindagap
|
public |
Takes a single panorama image and fills the empty grid lines with neighbour-weighted values.
|
2023-06-18 |
|
ngsindex
|
public |
Utilities for working with NGS index formats.
|
2023-06-18 |
|
baypass
|
public |
Genome-Wide Scan for Adaptive Differentiation and Association Analysis with population-specific covariables.
|
2023-06-18 |
|
treeshrink
|
public |
an algorithm for detecting (and removing) abnormally long branches in one or more phylogenetic trees
|
2023-06-18 |
|
contignet
|
public |
ContigNet, a deep learning based phage-host interaction prediction tool
|
2023-06-18 |
|
proteomiqon-alignmentbasedquantification
|
public |
Given an MS run in the mzLite or mzml format and a list of a list of peptides deduced by alignment, this tool iterates accross all and performs an XIC extration and quantification in similar to the PSMbasedQuantification tool.
|
2023-06-18 |
|
deltamsi
|
public |
DeltaMSI: AI-based modeling of microsatellite instability scoring on NGS data
|
2023-06-18 |
|
libshorah
|
public |
libshorah - Short Reads Assembly into Haplotypes
|
2023-06-18 |
|
imods
|
public |
toolkit to perform Normal Mode Analysis (NMA) in internal coordinates (IC) on both protein and nucleic acid atomic structures.
|
2023-06-18 |
|
hmftools-rose
|
public |
ROSE makes an actionability summary of the clinical relevant (for the Netherlands) genomic events and signatures as determined by the Hartwig pipeline.
|
2023-06-18 |
|
hmftools-protect
|
public |
PROTECT determines the clinical evidence applicable for a particular tumor sample based on all genomic events and signatures that are determined by the Hartwig pipeline.
|
2023-06-18 |
|
phaser
|
public |
phASEr performs haplotype phasing and provides measures of haplotypic expression for RNA based assays.
|
2023-06-18 |
|
metagem
|
public |
Generate context specific genome-scale metabolic models and predict metabolic interactions directly from metagenomic data
|
2023-06-18 |
|
authentict
|
public |
Estimates present-day DNA contamination in ancient DNA single-stranded libraries.
|
2023-06-18 |
|
netsyn
|
public |
NetSyn is a tool to detect conserved genomic contexts (i.e. synteny conservation) among a list of protein targets.
|
2023-06-18 |
|
drtransformer
|
public |
Heuristic cotranscriptional folding using the nearest neighbor energy model.
|
2023-06-18 |
|
hmnqc
|
public |
Compute differents metrics about quality, check identity and coverage from high-throughput sequencing provided by targeted NGS
|
2023-06-18 |
|
barseqcount
|
public |
Analysis of DNA barcode sequencing experiments
|
2023-06-18 |
|
dmbiolib
|
public |
Library of Python functions for bioinformatics
|
2023-06-18 |
|
circle-map-cpp
|
public |
Circle-Map-cpp is the C++ version of Circle-Map
|
2023-06-18 |
|
msmc2
|
public |
This program implements MSMC2, a method to infer population size history and population separation history from whole genome sequencing data
|
2023-06-18 |
|
nolb
|
public |
NOn-Linear rigid Block NMA approach (NOLB) is a conceptually simple and computationally efficient method for non-linear normal mode analysis.
|
2023-06-18 |
|
binspreader
|
public |
BinSPreader is a tool for improving existing binning using assembly
graph and other sources of connectivity information
|
2023-06-18 |
|
goblin
|
public |
Generate trusted prOteins to supplement BacteriaL annotatIoN
|
2023-06-18 |
|
hapsolo
|
public |
An optimization approach for removing secondary haplotigs during diploid genome assembly and scaffolding.
|
2023-06-18 |
|
whokaryote
|
public |
Classify metagenomic contigs as eukaryotic or prokaryotic
|
2023-06-18 |
|
mfold
|
public |
Mfold web server for nucleic acid folding and hybridization prediction.
|
2023-06-18 |
|
gff2bed
|
public |
Convert GFF3-formatted data to BED format
|
2023-06-18 |
|
purge-dups-runner
|
public |
High Performance Cluster (HPC) runner.
|
2023-06-18 |
|
updio
|
public |
UPDio is designed to identify uniparental disomy in probands of trio VCF data.
|
2023-06-18 |
|
proteomiqon-alignmentbasedquantstatistics
|
public |
The tool ProteomIQon.AlignmentBasedQuantStatistics scores peptide ion quantifications obtained through alignment between runs.
|
2023-06-18 |
|
fastsimcoal2
|
public |
fast sequential markov coalescent simulation of genomic data under complex evolutionary models
|
2023-06-18 |
|
gapless
|
public |
gapless assembly improvement tool
|
2023-06-18 |
|
pynteny
|
public |
Multiple HMM - search via synteny structures in Python
|
2023-06-18 |
|
perl-bio-rna-barriers
|
public |
Parse, query and manipulate output of Barriers
|
2023-06-18 |
|
perl-bio-rna-barmap
|
public |
Parse and query BarMap mappings.
|
2023-06-18 |
|
perl-bio-rna-treekin
|
public |
Classes for working with Treekin output.
|
2023-06-18 |
|
plmc
|
public |
Inference of couplings in proteins and RNAs from sequence variation.
|
2023-06-18 |
