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bioconductor-rlhub
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public |
An ExperimentHub package for accessing processed RLSuite data sets
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2023-07-13 |
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bioconductor-scatedata
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public |
Data for SCATE (Single-cell ATAC-seq Signal Extraction and Enhancement)
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2023-07-13 |
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replidec
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public |
Replication Cycle Decipher for Phages
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2023-07-13 |
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bioconductor-pwrewas.data
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public |
pwrEWAS.data: Reference data accompanying pwrEWAS
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2023-07-13 |
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r-fgwas
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public |
GWAS tools for longitudinal genetic traits based on fGWAS statistical model.
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2023-07-13 |
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r-scpred
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public |
Bioconda-installable version of scPred cell type classification method.
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2023-07-13 |
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r-merge-kallisto
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public |
merge_kallisto
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2023-07-13 |
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icount-mini
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public |
Computational pipeline for analysis of iCLIP data
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2023-07-13 |
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r-ccqtl
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public |
CCQTL is a wrapper around the R/qtl2 (Broman et al, Genetics 2019 10.1534/genetics.118.301595) functions, with hard-coded parameters tailored for QTL mapping in the Collaborative Cross.
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2023-07-13 |
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r-tmae
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public |
Tests and visualizations for mono-allelicly expressed variants.
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2023-07-12 |
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bioconductor-bgmix
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public |
Bayesian models for differential gene expression
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2023-07-12 |
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r-lipidomer
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public |
Create lipidome-wide heatmaps of statistics with the 'lipidomeR'. The 'lipidomeR' provides a streamlined pipeline for the systematic interpretation of the lipidome through publication-ready visualizations of regression models fitted on lipidomics data. With 'lipidomeR', associations between covariates and the lipidome can be interpreted systematically and intuitively through heatmaps, where lipids are categorized by the lipid class and are presented on two-dimensional maps organized by the lipid size and level of saturation. This way, the 'lipidomeR' helps you gain an immediate understanding of the multivariate patterns in the lipidome already at first glance. You can create lipidome-wide heatmaps of statistical associations, changes, differences, variation, or other lipid-specific values. The heatmaps are provided with publication-ready quality and the results behind the visualizations are based on rigorous statistical models.
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2023-07-12 |
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r-cghseg
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public |
Dedicated to the analysis of CGH (Comparative Genomic Hybridization) array profiles using segmentation models. 'cghseg' package is intended to detect breakpoints from CGH profiles. It can handle both single and multiple profiles analysis, to perform segmentation, normalization and calling. Methods for joint segmentation are described in Picard and al. (2011).
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2023-07-12 |
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r-samr
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public |
Significance Analysis of Microarrays
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2023-07-12 |
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coolpuppy
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public |
A versatile tool to perform pile-up analysis on Hi-C data in .cool format
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2023-07-12 |
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r-pairadise
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public |
PAIRADISE - Paired Replicate Analysis of Differential Splicing Events
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2023-07-12 |
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r-harmony
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public |
Fast, sensitive and accurate integration of single-cell data with Harmony
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2023-07-12 |
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bioconductor-neuca
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public |
NEUral network-based single-Cell Annotation tool
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2023-07-12 |
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r-sleuth
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public |
Tools for investigating RNA-Seq.
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2023-07-12 |
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r-umianalyzer
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public |
Tools for analyzing sequencing data containing unique molecular identifiers generated by 'UMIErrorCorrect' (<https://github.com/stahlberggroup/umierrorcorrect>).
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2023-07-12 |
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bioconductor-sccomp
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public |
Robust Outlier-aware Estimation of Composition and Heterogeneity for Single-cell Data
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2023-07-11 |
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bioconductor-fcbf
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public |
Fast Correlation Based Filter for Feature Selection
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2023-07-11 |
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bioconductor-multiomicsviz
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public |
Plot the effect of one omics data on other omics data along the chromosome
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2023-07-11 |
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bioconductor-tscr
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public |
A time series clustering package combining slope and Frechet distances
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2023-07-11 |
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bioconductor-mirmine
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public |
Data package with miRNA-seq datasets from miRmine database as RangedSummarizedExperiment
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2023-07-11 |
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bioconductor-bigpint
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public |
Big multivariate data plotted interactively
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2023-07-11 |
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bioconductor-neighbornet
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public |
Neighbor_net analysis
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2023-07-11 |
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bioconductor-perfect
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public |
Permutation filtration for microbiome data
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2023-07-11 |
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bioconductor-sscore
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public |
S-Score Algorithm for Affymetrix Oligonucleotide Microarrays
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2023-07-11 |
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bioconductor-farms
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public |
FARMS - Factor Analysis for Robust Microarray Summarization
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2023-07-10 |
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viramp-hub
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public |
VirAmp-Hub lets you manipulate/convert viral amplicon/primer scheme information.
|
2023-07-10 |
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bioconductor-logitt
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public |
logit-t Package
|
2023-07-10 |
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bioconductor-metavolcanor
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public |
Gene Expression Meta-analysis Visualization Tool
|
2023-07-10 |
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bioconductor-tweedeseqcountdata
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public |
RNA-seq count data employed in the vignette of the tweeDEseq package
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2023-07-10 |
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bioconductor-gcsscore
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public |
GCSscore: an R package for microarray analysis for Affymetrix/Thermo Fisher arrays
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2023-07-10 |
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bioconductor-stroma4
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public |
Assign Properties to TNBC Patients
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2023-07-10 |
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bioconductor-mimosa
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public |
Mixture Models for Single-Cell Assays
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2023-07-10 |
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duet
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public |
SNP-Assisted Structural Variant Calling and Phasing Using Oxford Nanopore Sequencing
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2023-07-09 |
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bioconductor-migsadata
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public |
MIGSA vignette data
|
2023-07-07 |
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bioconductor-cssp
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public |
ChIP-Seq Statistical Power
|
2023-07-07 |
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bioconductor-sepira
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public |
Systems EPigenomics Inference of Regulatory Activity
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2023-07-07 |
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btyper3
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public |
In silico taxonomic classification of Bacillus cereus group isolates using assembled genomes
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2023-07-07 |
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bioconductor-fscanr
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public |
Detect Programmed Ribosomal Frameshifting Events from mRNA/cDNA BLASTX Output
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2023-07-07 |
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bioconductor-clonality
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public |
Clonality testing
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2023-07-07 |
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bioconductor-savr
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public |
Parse and analyze Illumina SAV files
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2023-07-07 |
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bioconductor-hpastainr
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public |
Queries the Human Protein Atlas Staining Data for Multiple Proteins and Genes
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2023-07-07 |
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pmx_biobb
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public |
Toolkit for free-energy calculation setup/analysis and biomolecular structure handling
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2023-07-07 |
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bioconductor-flowmap
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public |
Mapping cell populations in flow cytometry data for cross-sample comparisons using the Friedman-Rafsky Test
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2023-07-07 |
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bioconductor-cnvgears
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public |
A Framework of Functions to Combine, Analize and Interpret CNVs Calling Results
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2023-07-07 |
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bioconductor-sparsedossa
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public |
Sparse Data Observations for Simulating Synthetic Abundance
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2023-07-07 |
