| Package Name | Access | Summary | Updated |
|---|---|---|---|
| bactopia-sketcher | public | Methods used by Bactopia for minmer sketching | 2025-04-22 |
| barseqcount | public | Analysis of DNA barcode sequencing experiments | 2025-04-22 |
| sem | public | A nucleosome calling package for nucleosome subtype detection | 2025-04-22 |
| dmbiolib | public | Library of Python functions for bioinformatics | 2025-04-22 |
| salty | public | SaLTy assigns a lineage to Staphylococcus aureus WGS data and is suitable for describing large-scale S. aureus genomic epidemiology. | 2025-04-22 |
| altair-mf | public | Software for alignment-free and spatial-temporal analysis of multi-FASTA data | 2025-04-22 |
| circle-map-cpp | public | Circle-Map-cpp is the C++ version of Circle-Map | 2025-04-22 |
| gum | public | A header-only library for representation of sequence graphs | 2025-04-22 |
| msmc2 | public | This program implements MSMC2, a method to infer population size history and population separation history from whole genome sequencing data | 2025-04-22 |
| peglit | public | Automatically identifies non-interfering nucleotide linkers between a pegRNA and 3' motif | 2025-04-22 |
| varcode | public | Variant annotation in Python | 2025-04-22 |
| nolb | public | NOn-Linear rigid Block NMA approach (NOLB) is a conceptually simple and computationally efficient method for non-linear normal mode analysis. | 2025-04-22 |
| sercol | public | Rich collection class with grouping and filtering helpers | 2025-04-22 |
| taxpasta | public | TAXonomic Profile Aggregation and STAndardisation | 2025-04-22 |
| b2b-utils | public | Genomics tools from BASE2BIO | 2025-04-22 |
| binspreader | public | BinSPreader is a tool for improving existing binning using assembly graph and other sources of connectivity information | 2025-04-22 |
| checkm2 | public | Assessing the quality of metagenome-derived genome bins using machine learning. | 2025-04-22 |
| goblin | public | Generate trusted prOteins to supplement BacteriaL annotatIoN | 2025-04-22 |
| hapsolo | public | An optimization approach for removing secondary haplotigs during diploid genome assembly and scaffolding. | 2025-04-22 |
| whokaryote | public | Classify metagenomic contigs as eukaryotic or prokaryotic | 2025-04-22 |
| cagee | public | Analyzes changes in gene expression in a way that accounts for phylogenetic history and provides a statistical foundation for evolutionary inferences | 2025-04-22 |
| metamobilepicker | public | MetaMobilePicker: identification of MGEs and ARGs based in metagenomic samples | 2025-04-22 |
| alcor | public | Software for alignment-free simulation, mapping, and visualization of low-complexity regions in FASTA data. | 2025-04-22 |
| modle | public | High-performance stochastic modeling of DNA loop extrusion interactions | 2025-04-22 |
| mfold | public | Mfold web server for nucleic acid folding and hybridization prediction. | 2025-04-22 |
