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pantax
|
public |
Strain-level taxonomic classification of metagenomic data using pangenome graphs
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2024-10-10 |
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picard
|
public |
Java tools for working with NGS data in the BAM format
|
2024-10-10 |
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picard-slim
|
public |
Java tools for working with NGS data in the BAM format.
|
2024-10-10 |
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sipros
|
public |
Tools for stable isotopic mass spectrometry-based metaproteomics
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2024-10-09 |
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patchify
|
public |
A library that helps you split image into small, overlappable patches, and merge patches back into the original image.
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2024-10-09 |
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woltka
|
public |
versatile meta-omic data classifier
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2024-10-09 |
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scitrack
|
public |
SciTrack provides basic logging capabilities to track scientific computations.
|
2024-10-08 |
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get_mnv
|
public |
Tool to identify Multi-Nucleotide Variants (MNVs) in genomic sequences.
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2024-10-08 |
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pgscatalog.match
|
public |
Tools for matching variants in PGS scoring files and target variant information files.
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2024-10-08 |
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ngs-tools
|
public |
Reusable tools for working with next-generation sequencing (NGS) data
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2024-10-08 |
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mutamr
|
public |
Stripped down tool for generation of annotated vcf from paired-end reads in a CPHL.
|
2024-10-08 |
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pgscatalog.calc
|
public |
Libraries and applications for working with calculated polygenic scores
|
2024-10-07 |
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vclean
|
public |
vClean: Assessing the contamination of viral genomes
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2024-10-07 |
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parebrick
|
public |
A bioinf tool for finding genome rearrangements in bacterial genomes.
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2024-10-07 |
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mini3di
|
public |
A NumPy port of the foldseek code for encoding protein structures to 3di.
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2024-10-07 |
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heliano
|
public |
HELIANO: A fast and accurate tool for detection of Helitron-like elements
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2024-10-07 |
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fastaptamer
|
public |
A Bioinformatic Toolkit for High-Throughput Sequence Analysis of Combinatorial Selections
|
2024-10-07 |
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snakemake-storage-plugin-gcs
|
public |
A Snakemake storage plugin for Google Cloud Storage
|
2024-10-07 |
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pyliftover
|
public |
Pure-python implementation of UCSC ``liftOver`` genome coordinate conversion.
|
2024-10-07 |
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galaxy_sequence_utils
|
public |
Sequence Utilities from the Galaxy project
|
2024-10-07 |
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orthofinder
|
public |
Accurate inference of orthogroups, orthologues, gene trees and rooted species tree made easy!
|
2024-10-07 |
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panaroo
|
public |
panaroo - an updated pipeline for pangenome investigation
|
2024-10-07 |
|
phables
|
public |
Phables: from fragmented assemblies to high-quality bacteriophage genomes
|
2024-10-04 |
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snakemake-interface-report-plugins
|
public |
This package provides a stable interface for interactions between Snakemake and its report plugins.
|
2024-10-04 |
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protgraph
|
public |
ProtGraph, a graph generator for proteins.
|
2024-10-04 |
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snakemake-interface-common
|
public |
Common functions and classes for Snakemake and its plugins
|
2024-10-04 |
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tracs
|
public |
Tracs - Fast pairwise transmission inference from single genome and/or metagenomic data
|
2024-10-03 |
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pysradb
|
public |
Python package for retrieving metadata and downloading datasets from SRA/ENA/GEO
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2024-10-03 |
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spec2vec
|
public |
Word2Vec based similarity measure of mass spectrometry data.
|
2024-10-03 |
|
verkko
|
public |
A hybrid genome assembly pipeline developed for telomere-to-telomere assembly of accurate (HiFi, ONT Duplex, ONT HERRO) and long (ONT UL) reads.
|
2024-10-03 |
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bactopia-teton
|
public |
Methods used by Bactopia for taxonomic classification
|
2024-10-02 |
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piper
|
public |
A lightweight python toolkit for gluing together restartable, robust command line pipelines
|
2024-10-02 |
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hsdfinder
|
public |
a tool to predict highly similar duplicates (HSDs) in eukaryotes
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2024-10-02 |
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hsdecipher
|
public |
Pipeline for the downstream analysis of highly similar duplicate genes
|
2024-10-02 |
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python-hivclustering
|
public |
A Python 3 library that makes inferences on HIV-1 transmission networks.
|
2024-10-01 |
|
eukulele
|
public |
Easy taxonomic annotation for eukaryotic microbes.
|
2024-10-01 |
|
peptide-shaker
|
public |
Independent platform for interpretation of proteomics identification results.
|
2024-10-01 |
|
searchgui
|
public |
User-friendly graphical tool for using proteomics identification search engines.
|
2024-10-01 |
|
minimizers
|
public |
Minimizers extraction from fasta files.
|
2024-10-01 |
|
olivar
|
public |
Olivar PCR tiling design
|
2024-10-01 |
|
catfasta2phyml
|
public |
Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file
|
2024-09-30 |
|
spreadgltools
|
public |
Visualising pathogen dispersal in a high-performance browser application
|
2024-09-30 |
|
agfusion
|
public |
Python package to annotate and visualize gene fusions.
|
2024-09-30 |
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snakeobjects
|
public |
Snakeobjects, an object-oriented workflow management system based on snakemake
|
2024-09-27 |
|
baltic
|
public |
Lightweight package for analyzing, manipulating and visualizing annotated phylogenetic trees.
|
2024-09-27 |
|
gbintk
|
public |
GraphBin-Tk: assembly graph-based metagenomic binning toolkit
|
2024-09-27 |
|
giatools
|
public |
Tools required for Galaxy Image Analysis
|
2024-09-27 |
|
fast-edit-distance
|
public |
A implementation of edit distance with improved runtime.
|
2024-09-27 |
|
repic
|
public |
REPIC - an ensemble learning approach to cryo-EM particle picking.
|
2024-09-26 |
|
gget
|
public |
gget enables efficient querying of genomic databases.
|
2024-09-26 |
