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ucsc-netsyntenic
|
public |
Add synteny info to net.
|
2024-12-10 |
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alignoth
|
public |
A tool for creating alignment plots from bam files
|
2024-12-10 |
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expressbetadiversity
|
public |
Taxon- and phylogenetic-based beta diversity measures.
|
2024-12-10 |
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r-gganatogram
|
public |
Create anatogram images for different organisms
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2024-12-10 |
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cogtriangles
|
public |
low-polynomial algorithm for assembling clusters of orthologous groups from intergenomic symmetric best matches
|
2024-12-10 |
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perl-math-random
|
public |
Random Number Generators
|
2024-12-10 |
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gecko
|
public |
A pairwise genome comparison software for the detection of High-scoring Segment Pairs
|
2024-12-10 |
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cmappy
|
public |
Assorted tools for interacting with .gct, .gctx, .grp, and .gmt files as well as other Connectivity Map (Broad Institute) data/tools
|
2024-12-10 |
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linearpartition
|
public |
Linear-Time Approximation of RNA Folding Partition Function and Base Pairing Probabilities
|
2024-12-10 |
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virdig
|
public |
A de novo transcriptome assembler for coronavirus.
|
2024-12-10 |
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biobb_io
|
public |
Biobb_io is the Biobb module collection to fetch data to be consumed by the rest of the Biobb building blocks.
|
2024-12-10 |
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glimmerhmm
|
public |
No Summary
|
2024-12-10 |
|
poa
|
public |
POA is Partial Order Alignment, a fast program for multiple sequence alignment in bioinformatics. Its advantages are speed, scalability, sensitivity, and the superior ability to handle branching / indels in the alignment.
|
2024-12-10 |
|
blast-legacy
|
public |
The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences.
|
2024-12-10 |
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equirep
|
public |
EquiRep is tool to identify tandem repeats.
|
2024-12-10 |
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bwapy
|
public |
Bwapy provides python wrappers for bwa.
|
2024-12-10 |
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pyprophet
|
public |
Python reimplementation of mProphet peak scoring
|
2024-12-10 |
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consan
|
public |
Pairwise RNA structural alignment, both unconstrained and constrained on alignment pins.
|
2024-12-10 |
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prank
|
public |
PRANK is a probabilistic multiple alignment program for DNA, codon and amino-acid sequences.
|
2024-12-10 |
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parasail-python
|
public |
Python bindings for the parasail C library containing implementations of pairwise sequence alignment algorithms.
|
2024-12-10 |
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pyjess
|
public |
Cython bindings and Python interface to JESS, a 3D template matching software.
|
2024-12-10 |
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tinyalign
|
public |
A small Python module providing edit distance and Hamming distance computation.
|
2024-12-10 |
|
genbank
|
public |
Code to work with Genbank files
|
2024-12-10 |
|
hhsuite
|
public |
HH-suite3 for fast remote homology detection and deep protein annotation
|
2024-12-10 |
|
taxonomy
|
public |
Python and Rust library for loading, saving, and manipulating taxonomic trees
|
2024-12-10 |
|
pyseq-align
|
public |
Python interface for the seq-align C library
|
2024-12-10 |
|
cgranges
|
public |
cgranges is a small C library for genomic interval overlap queries
|
2024-12-10 |
|
reduce
|
public |
Reduce - tool for adding and correcting hydrogens in PDB files
|
2024-12-10 |
|
svdb
|
public |
structural variant database software
|
2024-12-10 |
|
odgi
|
public |
An optimized dynamic genome/graph implementation.
|
2024-12-10 |
|
plinkio
|
public |
A library for parsing plink genotype files
|
2024-12-10 |
|
sorted_nearest
|
public |
Find nearest interval.
|
2024-12-10 |
|
pytriangle
|
public |
A python interface to the 2D triangulation program TRIANGLE
|
2024-12-10 |
|
binchicken
|
public |
Targeted recovery of low abundance metagenome assembled genomes through intelligent coassembly
|
2024-12-09 |
|
mdust
|
public |
No Summary
|
2024-12-09 |
|
mmft
|
public |
Max's minimal fasta toolkit
|
2024-12-09 |
|
gafpack
|
public |
Convert alignments to pangenome variation graphs to coverage maps
|
2024-12-09 |
|
starfish
|
public |
Standardized analysis pipeline for image-based transcriptomics.
|
2024-12-09 |
|
kinex
|
public |
Kinex infers causal kinases from phosphoproteomics data.
|
2024-12-09 |
|
nanocomp
|
public |
Comparing runs of Oxford Nanopore sequencing data and alignments
|
2024-12-09 |
|
expam
|
public |
Metagenomic profiling using a reference phylogeny
|
2024-12-09 |
|
voyager
|
public |
Rapid and efficient mapping algorithm for long sequencing reads with insertion- and deletion errors.
|
2024-12-09 |
|
gfainject
|
public |
Inject alignment into pangenome graphs
|
2024-12-08 |
|
pyskani
|
public |
PyO3 bindings and Python interface to skani, a method for fast fast genomic identity calculation using sparse chaining.
|
2024-12-07 |
|
cblaster
|
public |
Find clustered hits from a BLAST search.
|
2024-12-06 |
|
probconsrna
|
public |
PROBCONSRNA is an experimental version of PROBCONS for nucleotide sequences
|
2024-12-06 |
|
probcons
|
public |
PROBCONS is a probabilistic consistency-based multiple sequence alignment
|
2024-12-06 |
|
cgat-apps
|
public |
Computational Genomics Analysis Toolkit.
|
2024-12-06 |
|
phylip
|
public |
Package of programs for inferring phylogenies
|
2024-12-06 |
|
nordic
|
public |
NORDic: a Network-Oriented package for the Repurposing of Drugs
|
2024-12-06 |
