| Package Name | Access | Summary | Updated |
|---|---|---|---|
| fairy | public | fairy calculates all-to-all approximate coverage for multi-sample metagenomic binning > 100x faster than alignment. | 2025-04-22 |
| aacon | public | AACon: A Fast Amino Acid Conservation Calculation Service | 2025-04-22 |
| cosg | public | Accurate and fast cell marker gene identification with COSG. | 2025-04-22 |
| epik | public | EPIK is a tool for fast alignement-free phylogenetic placements. | 2025-04-22 |
| rrikindp | public | Evaluation of thermodynamic and kinetic features of RNA-RNA interactions. | 2025-04-22 |
| sctriangulate | public | A Python package to mix-and-match conflicting clustering results in single cell analysis, and generate reconciled clustering solutions. | 2025-04-22 |
| tracegroomer | public | Format and normalise tracer metabolomics given file(s), to produce the .csv files which are ready for DIMet analysis. | 2025-04-22 |
| biodigest | public | In silico Validation of Disease and Gene Sets, Clusterings or Subnetworks (DIGEST) | 2025-04-22 |
| ltr_finder_parallel | public | Perl wrapper to parallelize ltr_finder | 2025-04-22 |
| segalign-full | public | SegAlign: A Scalable GPU-Based Whole Genome Aligner | 2025-04-22 |
| pass | public | Proteome Assembler with Short Sequence peptides | 2025-04-22 |
| recgraph | public | Optimal sequence-to-graph alignment with recombinations | 2025-04-22 |
| multirnafold | public | RNA/DNA secondary structure prediction for one, two, or many interacting strands | 2025-04-22 |
| pybigtools | public | pybigtools: Python bindings to the Bigtools Rust library for high-performance BigWig and BigBed I/O | 2025-04-22 |
| hmftools-cuppa | public | Predict tissue of origin for tumor samples from WGTS data. | 2025-04-22 |
| pytransaln | public | Translation-guided nucleotide alignment for coding sequences | 2025-04-22 |
| r-linxreport | public | LINX Result Reporter | 2025-04-22 |
| hmftools-mark-dups | public | Mark read duplicates and form consenus sequences | 2025-04-22 |
| gffpandas | public | Parse GFF3 into Pandas dataframes | 2025-04-22 |
| r-scevan | public | Single CEll Variational Aneuploidy aNalysis | 2025-04-22 |
| peer | public | A collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods | 2025-04-22 |
| gametes | public | Tool for the generation of complex single SNP models | 2025-04-22 |
| r-chord | public | Predict HRD using somatic mutations contexts | 2025-04-22 |
| r-mutsigextractor | public | Extract mutational signatures from VCF files | 2025-04-22 |
| hmftools-virus-interpreter | public | Post-process VIRUSBreakend summary results. | 2025-04-22 |
