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esme_esmf_openmpi_4_1_6
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public |
ESMF - Earth System Modeling Framework
|
2025-02-11 |
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esme_hdf5_openmpi_4_1_6
|
public |
HDF5 - Hierarchical Data Format 5
|
2025-02-11 |
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esme_omb_openmpi_4_1_6
|
public |
OSU Micro Benchmarks
|
2025-02-11 |
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esme_pio_openmpi_4_1_6
|
public |
ParallelIO - High-level parallel I/O library
|
2025-02-11 |
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esme_netcdf-c_openmpi_4_1_6
|
public |
NetCDF-C - netCDF interface for C
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2025-02-11 |
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kakscalculator2
|
public |
KaKs_Calculator2.0 calculates Ka and Ks.
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2025-02-11 |
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r-crbhits
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public |
CRBHits: From Conditional Reciprocal Best Hits to Codon Alignments and Ka/Ks in R.
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2025-02-11 |
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dagchainer
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public |
DAGchainer identifies syntenic regions.
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2025-02-11 |
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bioconductor-msa2dist
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public |
MSA2dist calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis
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2025-02-11 |
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mashtree
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public |
Create a tree using Mash distances
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2025-02-11 |
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perl-aceperl
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public |
Object-Oriented Access to ACEDB Databases
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2025-02-11 |
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esme_pnetcdf_mpich_4_2_3
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public |
PnetCDF - Parallel netCDF
|
2025-02-11 |
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esme_esmf_mpich_4_2_3
|
public |
ESMF - Earth System Modeling Framework
|
2025-02-11 |
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esme_omb_mpich_4_2_3
|
public |
OSU Micro Benchmarks
|
2025-02-11 |
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esme_mpich_4_2_3
|
public |
Earth System Modelling Environment (ESME) - A bundle for scientific computing packages for climate modelling with MPI support.
|
2025-02-11 |
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esme_hdf5_mpich_4_2_3
|
public |
HDF5 - Hierarchical Data Format 5
|
2025-02-11 |
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esme_pio_mpich_4_2_3
|
public |
ParallelIO - High-level parallel I/O library
|
2025-02-11 |
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esme_netcdf-fortran_mpich_4_2_3
|
public |
NetCDF-Fortran - netCDF interface for Fortran
|
2025-02-11 |
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esme_netcdf-c_mpich_4_2_3
|
public |
NetCDF-C - netCDF interface for C
|
2025-02-11 |
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lollipop
|
public |
A tool for Deconvolution for Wastewater Genomics
|
2025-02-11 |
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tbl2asn-forever
|
public |
tbl2asn is a program that automates the creation of sequence records for submission to GenBank
|
2025-02-11 |
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fiji
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public |
Fiji is an image processing package—a "batteries-included" distribution of ImageJ, bundling a lot of plugins which facilitate scientific image analysis.
|
2025-02-11 |
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piler-cr
|
public |
Identification and analysis of CRISPR repeats.
|
2025-02-11 |
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pycomo
|
public |
PyCoMo is a software package for generating and analysing compartmentalized community metabolic models.
|
2025-02-11 |
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ena-upload-cli
|
public |
Command Line Interface to upload data to the European Nucleotide Archive
|
2025-02-11 |
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biobb_mem
|
public |
Biobb_mem is the Biobb module for membrane structure analysis.
|
2025-02-11 |
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pybigtools
|
public |
pybigtools: Python bindings to the Bigtools Rust library for high-performance BigWig and BigBed I/O
|
2025-02-11 |
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unicore
|
public |
Universal and efficient core gene phylogeny with Foldseek and ProstT5
|
2025-02-11 |
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paraphase
|
public |
HiFi-based caller for highly homologous genes
|
2025-02-11 |
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nanosim
|
public |
NanoSim is a fast and scalable read simulator for Nanopore sequencing data.
|
2025-02-11 |
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metabuli
|
public |
Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid
|
2025-02-11 |
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bigtools
|
public |
Bigtools provides a high-level, performant API for reading and writing bigWig and bigBed files.
|
2025-02-10 |
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raven-assembler
|
public |
Raven is an assembler for raw reads generated by the third generation sequencing.
|
2025-02-10 |
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peaks2utr
|
public |
A robust, parallelized Python CLI for annotating three_prime_UTR
|
2025-02-10 |
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sibeliaz
|
public |
A fast whole-genome aligner based on de Bruijn graphs.
|
2025-02-10 |
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libidn
|
public |
No Summary
|
2025-02-10 |
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maf2synteny
|
public |
A tool that postprocesses whole genome alignment (for two or more genomes) and produces coarse-grained synteny blocks.
|
2025-02-10 |
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ska2
|
public |
SKA (Split Kmer Analysis) version 2
|
2025-02-10 |
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pydamage
|
public |
Damage parameter estimation for ancient DNA.
|
2025-02-10 |
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artic-porechop
|
public |
Adapter removal and demultiplexing of Oxford Nanopore reads (fork of rrwick/Porechop)
|
2025-02-10 |
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ctyper
|
public |
Genotyping sequence-resolved copy-number variation using pangenomes.
|
2025-02-10 |
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tmalign
|
public |
TM-align sequence-order independent protein structure alignment.
|
2025-02-10 |
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r-tidyheatmap
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public |
This is a tidy implementation for heatmap. At the moment it is based on the (great) package 'ComplexHeatmap'. The goal of this package is to interface a tidy data frame with this powerful tool. Some of the advantages are: Row and/or columns colour annotations are easy to integrate just specifying one parameter (column names). Custom grouping of rows is easy to specify providing a grouped tbl. For example: df %>% group_by(...). Labels size adjusted by row and column total number. Default use of Brewer and Viridis palettes.
|
2025-02-09 |
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n50
|
public |
calculate N50 from FASTA/FASTQ files, producing both machine and human friendly outputs
|
2025-02-09 |
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multiqc
|
public |
Create aggregate bioinformatics analysis reports across many samples and tools.
|
2025-02-09 |
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confindr
|
public |
Detect intra- and inter-species bacterial contamination in NGS reads.
|
2025-02-07 |
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trgt
|
public |
Tandem repeat genotyping and visualization from PacBio HiFi data
|
2025-02-07 |
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teloscope
|
public |
A telomere annotation tools for genome assemblies
|
2025-02-07 |
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varvamp
|
public |
Variable VirusAMPlicons (varVAMP) is a tool to design primers for highly diverse viruses.
|
2025-02-07 |
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defense-finder
|
public |
Defense Finder: allow for a systematic search of all known anti-phage systems.
|
2025-02-07 |
