bioconda
by bioconda (Organization)
Bioconda is a distribution of bioinformatics software realized as a channel for the versatile Conda package manager.
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To install packages from this channel, use the channel temporarily with conda or add it to your .condarc file for configured ongoing access. Learn more
- Temporary
- Configured
Packages
| Name | Latest Version | Summary | Updated | License |
|---|
| 10x_bamtofastq | 1.4.1 | Tool for converting 10x BAMs produced by Cell Ranger, Space Ranger, Cell Ranger ATAC, Cell Ranger DNA, and Long Ranger back to FASTQ files that can be used as inputs to re-run analysis | Sep 16, 2025 | MIT |
| 2pg_cartesian | 1.0.1 | 2pg cartesian is a framework of optimization algorithms for protein structure prediction. | Apr 22, 2025 | — |
| 3d-dna | 201008 | 3D de novo assembly (3D-DNA) pipeline. | Apr 22, 2025 | MIT |
| 3seq | 1.8 | 3SEQ tests all sequence triplets in an alignment for a mosaic recombination signal. | Sep 10, 2025 | CC BY-NC-SA 4.0 |
| a-liner | 1.0.0 | Flexible command-line tool for linear visualization of genome-scale sequence alignments | Feb 23, 2026 | MIT |
| a3partitioner | 0.1.0 | A bioinformatics tool for creating APOBEC3 and non-APOBEC3 partitions | Apr 22, 2025 | MIT |
| a5-miseq | 20160825 | A5-miseq is a pipeline for assembling DNA sequence data generated on the Illumina sequencing platform. This README will take you through the steps necessary for running _A5-miseq_ | Apr 22, 2025 | GPLv3 |
| aacon | 1.1 | AACon: A Fast Amino Acid Conservation Calculation Service | Apr 22, 2025 | Apache-2.0 |
| aakomp | 1.0.0 | amino acid k-mer-based genome completeness assessment | Mar 20, 2026 | GPL-3.0 |
| aardvark | 0.10.5 | A tool for sniffing out the differences in vari-Ants. | Apr 7, 2026 | MIT |
| aastk | 0.1.1 | Toolkit for analyses of amino acid sequences | Apr 1, 2026 | GPL-3.0-or-later |
| abacas | 1.3.1 | ABACAS is intended to rapidly contiguate (align, order, orientate), visualize and design primers to close gaps on shotgun assembled contigs based on a reference sequence. | Apr 22, 2025 | GPL-2.0-or-later |
| abacat | 0.0.4a | abacat - A BActerial genome Curation and Annotation Toolkit | Apr 22, 2025 | MIT |
| abawaca | 1.00 | — | Aug 28, 2025 | — |
| abeona | 0.45.0 | A simple transcriptome assembler based on kallisto and Cortex graphs. | Apr 22, 2025 | Apache Software |
| abismal | 3.3.0 | abismal is a fast and memory-efficient mapper for short bisulfite sequencing reads. | Jun 15, 2025 | GPL-3.0-only |
| abnumber | 0.4.4 | AbNumber - Antibody numbering using ANARCI | May 21, 2025 | MIT |
| abpoa | 1.5.6 | abPOA: fast SIMD-based partial order alignment using adaptive band. | Feb 23, 2026 | MIT |
| abra2 | 2.24 | ABRA2 is an updated implementation of ABRA | Apr 22, 2025 | MIT |
| abricate | 1.4.0 | Mass screening of contigs for antibiotic resistance genes | Apr 3, 2026 | GPL-2.0-only |
| abritamr | 1.2.0 | Running AMRFinderPlus for MDU. | Apr 14, 2026 | GPL-3.0-only |
| abromics_galaxy_json_extractor | 0.8.3.6 | Tool to convert Galaxy AMR output to abromics project | Apr 22, 2025 | GPLv3 |
| abruijn | 2.1b | Long read assembly via A-Bruijn graph | Apr 22, 2025 | BSD-3-Clause |
| absense | 1.0.1 | abSENSE: a method to interpret undetected homologs | Apr 22, 2025 | GPL-3.0-or-later |
| abundancebin | 1.0.1 | — | Aug 28, 2025 | — |