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bedtk
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public |
Bedtk is a set of simple tools to process BED files.
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2025-08-28 |
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scmidas
|
public |
A torch-based integration method for single-cell multi-omic data.
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2025-08-28 |
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myloasm
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public |
myloasm - high-resolution metagenome assembly for (noisy) long reads
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2025-08-28 |
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orthofinder
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public |
Accurate inference of orthogroups, orthologues, gene trees and rooted species tree made easy!
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2025-08-28 |
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vcontact3
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public |
Viral Contig Automatic Clustering and Taxonomy.
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2025-08-28 |
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repeatmasker
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public |
RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
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2025-08-28 |
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viralmsa
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public |
Reference-guided multiple sequence alignment of viral genomes
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2025-08-28 |
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vapor
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public |
VAPOR is a tool for classification of Influenza samples from short read sequence data for further bioinformatics analysis.
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2025-08-28 |
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olivar
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public |
Olivar PCR tiling design
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2025-08-28 |
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freyja
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public |
Freyja recovers relative lineage abundances from mixed SARS-CoV-2 samples and provides functionality to analyze lineage dynamics.
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2025-08-28 |
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cawlign
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public |
A tool for aligning consensus sequences to reference genomes.
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2025-08-28 |
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arborator
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public |
Arborator: Simplifying operationalized pathogen surveillance and outbreak detection.
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2025-08-28 |
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pyjess
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public |
Cython bindings and Python interface to JESS, a 3D template matching software.
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2025-08-28 |
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pgscatalog.calc
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public |
Libraries and applications for working with calculated polygenic scores.
|
2025-08-28 |
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gubbins
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public |
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins.
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2025-08-28 |
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magmax
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public |
MAGmax is a robust tool for dereplicating MAGs through bin merging and reassembly.
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2025-08-28 |
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hyphy
|
public |
An open-source software package for comparative sequence analysis using stochastic evolutionary models.
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2025-08-28 |
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sawfish
|
public |
Joint structural variant and copy number variant caller for HiFi sequencing data
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2025-08-28 |
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r-flanders
|
public |
Fast colocalization using AnnData objects in R
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2025-08-28 |
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r-presto
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public |
Scalable implementation of the Wilcoxon rank sum test and auROC statistic. Interfaces to dense and sparse matrices, as well as genomics analysis frameworks Seurat and SingleCellExperiment.
|
2025-08-28 |
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coot-headless
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public |
Coot Headless API - Software for macromolecular model building.
|
2025-08-28 |
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zol
|
public |
zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters.
|
2025-08-27 |
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ena-webin-cli
|
public |
Data submissions to ENA can be made using the Webin command line submission interface (Webin-CLI).
|
2025-08-27 |
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allelecodes
|
public |
Allele Code Assignment Algorithm for cgMLST schemes
|
2025-08-27 |
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varpubs
|
public |
Tool for finding PubMed evidence on genetic variants and generating LLM-based summaries
|
2025-08-27 |
