| Package Name | Access | Summary | Updated |
|---|---|---|---|
| pytantan | public | Cython bindings and Python interface to Tantan, a fast method for identifying repeats in DNA and protein sequences. | 2025-07-16 |
| anospp-analysis | public | ANOSPP data analysis | 2025-07-16 |
| plateo | public | Read/write microplate and picklist data for lab automation | 2025-07-16 |
| staden_io_lib | public | Staden io_lib is a library of file reading and writing code e.g. for SAM/BAM/CRAM. | 2025-07-16 |
| coverm | public | CoverM aims to be a configurable, easy to use and fast DNA read coverage and relative abundance calculator focused on metagenomics applications | 2025-07-16 |
| pcangsd | public | Framework for analyzing low-depth next-generation sequencing (NGS) data in heterogeneous/structured populations using principal component analysis (PCA). | 2025-07-16 |
| mapdamage2 | public | mapDamage: tracking and quantifying damage patterns in ancient DNA sequencing reads generated by Next-Generation Sequencing platforms. | 2025-07-16 |
| automappa | public | Automappa: An interactive interface for exploration of metagenomes. | 2025-07-15 |
| famsa | public | Algorithm for large-scale multiple sequence alignments. | 2025-07-15 |
| kleborate | public | Kleborate: a tool for typing and screening pathogen genome assemblies. | 2025-07-15 |
| seqnado | public | Pipelines for genomics analysis | 2025-07-15 |
| amdirt | public | amdirt: AncientMetagenomeDir Toolkit | 2025-07-15 |
| hgtools | public | Classes for Mercurial and Git repositories. | 2025-07-15 |
| tb-profiler | public | Profiling tool for Mycobacterium tuberculosis to detect drug resistance and lineage from sequencing data | 2025-07-15 |
| hits | public | Utilities for processing high-throughput sequencing experiments. | 2025-07-15 |
| gffcompare | public | GffCompare by Geo Pertea. | 2025-07-15 |
| biocommons.seqrepo | public | Python package for writing and reading a local collection of biological sequences. | 2025-07-15 |
| ebolaseq | public | Tool for downloading and analyzing Ebola virus sequences. | 2025-07-15 |
| aci | public | Visualizes coverage for amplicons. | 2025-07-15 |
| geofetch | public | Downloads data and metadata from GEO and SRA and creates standard PEPs. | 2025-07-15 |
| perl-inline | public | Write Perl Subroutines in Other Programming Languages. | 2025-07-15 |
| synapseclient | public | Python client for Synapse. | 2025-07-15 |
| bioconductor-alabaster.matrix | public | Load and Save Artifacts from File | 2025-07-15 |
| pathogen-profiler | public | Library giving access to classes and functions to create a profiling tool to look for mutations from NGS data. | 2025-07-15 |
| bioconductor-alabaster.base | public | Save Bioconductor Objects To File | 2025-07-15 |
