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echidna
|
public |
Mapping genotype to phenotype through joint probabilistic modeling of single-cell gene expression and chromosomal copy number variation.
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2025-07-24 |
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hmftools-esvee
|
public |
Structural variant caller specialised for breakend-breakpoint calling.
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2025-07-24 |
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ska2
|
public |
SKA (Split Kmer Analysis) version 2.
|
2025-07-24 |
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perl-dbd-sqlite
|
public |
Self Contained RDBMS in a DBI Driver
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2025-07-24 |
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snakemake-interface-common
|
public |
Common functions and classes for Snakemake and its plugins.
|
2025-07-24 |
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gencore
|
public |
Generate consensus reads to reduce sequencing noises and remove duplications
|
2025-07-24 |
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genform
|
public |
Generation of molecular formulas by high-resolution MS and MS/MS data
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2025-07-24 |
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mutscan
|
public |
Detect and visualize target mutations by scanning FastQ files directly.
|
2025-07-24 |
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rnashapes
|
public |
RNAshape abstraction maps structures to a tree-like domain of shapes, retaining adjacency and nesting of structural features, but disregarding helix lengths. Shape abstraction integrates well with dynamic programming algorithms, and hence it can be applied during structure prediction rather than afterwards. This avoids exponential explosion and can still give us a non-heuristic and complete account of properties of the molecule's folding space.
|
2025-07-24 |
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perl-perlio-utf8_strict
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public |
Fast and correct UTF-8 IO.
|
2025-07-24 |
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genefuse
|
public |
Gene fusion detection and visualization
|
2025-07-24 |
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bellmans-gapc
|
public |
A language and compiler for algebraic dynamic programming.
|
2025-07-24 |
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plasann
|
public |
A tool for plasmid annotation and visualization.
|
2025-07-24 |
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pysam
|
public |
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
|
2025-07-24 |
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moments
|
public |
Evolutionary inference using SFS and LD statistics.
|
2025-07-24 |
|
star
|
public |
An RNA-seq read aligner.
|
2025-07-24 |
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cas-offinder
|
public |
Cas-OFFinder is OpenCL based, ultrafast and versatile program that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases (RGEN).
|
2025-07-24 |
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hmftools-wisp
|
public |
WISP performs tumor fraction estimate for longitudinal samples
|
2025-07-24 |
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fpocketr
|
public |
CLI tool to find, characterize, and visualize RNA-ligand binding pockets.
|
2025-07-24 |
|
gecko
|
public |
A pairwise genome comparison software for the detection of High-scoring Segment Pairs
|
2025-07-24 |
|
gctb
|
public |
GCTB (Genome-wide Complex Trait Bayesian ) is a software tool that comprises a family of Bayesian linear mixed models for complex trait analyses using genome-wide SNPs.
|
2025-07-24 |
|
minialign
|
public |
Fast and accurate alignment tool for PacBio and Nanopore long reads.
|
2025-07-24 |
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minia
|
public |
Minia is a short-read assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop computer in a day.
|
2025-07-23 |
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hmftools-chord
|
public |
Predict HRD using somatic mutations contexts
|
2025-07-23 |
|
pcdl
|
public |
physicell data loader (pcdl) provides a platform independent, python3 based, pip installable interface to transform output, generated with the PhysiCell agent based modeling framework, into standard formats.
|
2025-07-23 |
