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mupbwt
|
public |
A light pbwt-based index
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2025-07-28 |
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diamond
|
public |
Accelerated BLAST compatible local sequence aligner.
|
2025-07-28 |
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hmftools-pave
|
public |
PAVE annotates SNV/MNV/INDEL calls with consequence on corresponding genes, transcripts, and proteins.
|
2025-07-28 |
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hmftools-cobalt
|
public |
Calculate read-depth counts and GC ratios to use in PURPLE.
|
2025-07-28 |
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hmftools-isofox
|
public |
Isofox is a tool for counting fragment support for identifying and counting gene and transcript features using genome aligned RNASeq data in tumor samples.
|
2025-07-28 |
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readfq
|
public |
A high-speed tool to calculate reads number and total base count in FASTQ file, forked from Li Heng's original version
|
2025-07-28 |
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kmergenie
|
public |
KmerGenie estimates the best k-mer length for genome de novo assembly
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2025-07-28 |
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ribotin
|
public |
Ribosomal DNA assembly tool.
|
2025-07-28 |
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maker
|
public |
MAKER is a portable and easily configurable genome annotation pipeline.
|
2025-07-28 |
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mp-est
|
public |
Maximum Pseudo-likelihood Estimation of Species Trees
|
2025-07-28 |
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winnowmap
|
public |
Winnowmap is a long-read mapping algorithm optimized for mapping ONT and PacBio reads to repetitive reference sequences.
|
2025-07-28 |
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graphaligner
|
public |
Sequence to graph aligner for long reads
|
2025-07-27 |
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plass
|
public |
Plass (Protein-Level ASSembler) and PenguiN (Protein-guided Nucleotide assembler) are methods to assemble short read sequencing data on a protein level to proteins or DNA contigs
|
2025-07-27 |
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spacepharer
|
public |
SpacePHARER: Sensitive identification of phages from CRISPR spacers in prokaryotic hosts
|
2025-07-27 |
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alphafill
|
public |
Transplant missing compounds to the AlphaFold models
|
2025-07-27 |
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mrtrix3
|
public |
A set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and apparent fibre density
|
2025-07-27 |
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fibertools-rs
|
public |
Mitchell Vollger's rust tools for fiberseq data.
|
2025-07-27 |
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hmftools-orange
|
public |
ORANGE summarizes the key outputs from all algorithms in the Hartwig suite.
|
2025-07-27 |
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mmseqs2
|
public |
MMseqs2: ultra fast and sensitive sequence search and clustering suite
|
2025-07-27 |
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checkatlas
|
public |
One liner tool to check the quality of your single-cell atlases.
|
2025-07-26 |
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viloca
|
public |
VILOCA is a tool to analyse short- and long-read sequencing viral samples. It provides mutation calls and local haplotypes.
|
2025-07-25 |
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bandwagon
|
public |
Simulate DNA band patterns for gel migration experiments
|
2025-07-24 |
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met4j
|
public |
Met4J is an open-source Java library dedicated to the structural analysis of metabolic networks
|
2025-07-24 |
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metadmg
|
public |
metaDMG-cpp: fast and efficient method for estimating mutation and damage rates in ancient DNA data.
|
2025-07-24 |
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echidna
|
public |
Mapping genotype to phenotype through joint probabilistic modeling of single-cell gene expression and chromosomal copy number variation.
|
2025-07-24 |
