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magpurify
|
public |
Identify and remove incorrectly binned contigs from metagenome-assembled genomes.
|
2025-08-14 |
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mapdia
|
public |
Performs essential data preprocessing, including novel retention time-based normalization method and a sequence of peptide/fragment selection steps, and more importantly, hierarchical model-based statistical significance analysis for multi-group comparisons under representative experimental designs.
|
2025-08-14 |
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mea
|
public |
Mea was developed as part of the lab class "Bioinformatik von RNA- und Proteinstrukturen (Praktikum, Modul 10-202-2208)". The package predicts maximum expected accuracy (MEA) RNA secondary structures from dot plots of RNAs while correcting the score in dependence of base pair span. Furthermore, it provides tools to evaluate predictions and optimize parameters.
|
2025-08-14 |
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livekraken
|
public |
LiveKraken is a real-time metagenomic classifier for Illumina sequencing data.
|
2025-08-14 |
|
autocycler
|
public |
A tool for generating consensus long-read assemblies for bacterial genomes.
|
2025-08-13 |
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cuna
|
public |
CUNA: Cytosine Uracil Neural Algorithm for ancient DNA damage detection using nanopore signals.
|
2025-08-13 |
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scoring-matrices
|
public |
Dependency free, Cython-compatible scoring matrices to use with biological sequences.
|
2025-08-13 |
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tetrimmer
|
public |
TETrimmer is designed to replace and assist TE manual curation.
|
2025-08-13 |
|
perbase
|
public |
Per-base metrics on BAM/CRAM files.
|
2025-08-13 |
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esme_hdf5_mvapich_4_0_ucx
|
public |
HDF5 - Hierarchical Data Format 5
|
2025-08-13 |
|
esme_netcdf-c_mvapich_4_0_ucx
|
public |
NetCDF-C - netCDF interface for C
|
2025-08-13 |
|
esme_mvapich_4_0_ucx
|
public |
Earth System Modelling Environment (ESME) - A bundle for scientific computing packages for climate modelling with MPI support.
|
2025-08-13 |
|
esme_pnetcdf_mvapich_4_0_ucx
|
public |
PnetCDF - Parallel netCDF
|
2025-08-13 |
|
esme_pio_mvapich_4_0_ucx
|
public |
ParallelIO - High-level parallel I/O library
|
2025-08-13 |
|
esme_netcdf-fortran_mvapich_4_0_ucx
|
public |
NetCDF-Fortran - netCDF interface for Fortran
|
2025-08-13 |
|
esme_esmf_mvapich_4_0_ucx
|
public |
ESMF - Earth System Modeling Framework
|
2025-08-13 |
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skani
|
public |
skani is a fast and robust tool for calculating ANI between metagenome assembled genomes and contigs.
|
2025-08-13 |
|
distree
|
public |
A tool to calculate distances between phylogenetic trees.
|
2025-08-12 |
|
ddprimer
|
public |
Pipeline for designing primers optimized for droplet digital PCR
|
2025-08-12 |
|
ddquint
|
public |
Droplet Digital PCR Multiplex Analysis for chromosomal copy number detection
|
2025-08-12 |
|
longcalld
|
public |
longcallD: local-haplotagging-based small and structural variant calling
|
2025-08-12 |
|
fstic
|
public |
High-performance Rust tool for computing multiple genetic distance metrics (FST, GST, Jost’s D, etc.) from VCFs or allele-frequency tables, with parallel processing and advanced filtering.
|
2025-08-12 |
|
bioconductor-survcomp
|
public |
Performance Assessment and Comparison for Survival Analysis
|
2025-08-12 |
|
pbsim3
|
public |
A simulator for all types of Pacific Biosciences (PacBio) and Oxford Nanopore Technologies (ONT) long reads
|
2025-08-12 |
|
riassigner
|
public |
GC-MS retention index calculation
|
2025-08-12 |
