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autocycler
|
public |
A tool for generating consensus long-read assemblies for bacterial genomes.
|
2025-08-13 |
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cuna
|
public |
CUNA: Cytosine Uracil Neural Algorithm for ancient DNA damage detection using nanopore signals.
|
2025-08-13 |
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scoring-matrices
|
public |
Dependency free, Cython-compatible scoring matrices to use with biological sequences.
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2025-08-13 |
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tetrimmer
|
public |
TETrimmer is designed to replace and assist TE manual curation.
|
2025-08-13 |
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perbase
|
public |
Per-base metrics on BAM/CRAM files.
|
2025-08-13 |
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esme_hdf5_mvapich_4_0_ucx
|
public |
HDF5 - Hierarchical Data Format 5
|
2025-08-13 |
|
esme_netcdf-c_mvapich_4_0_ucx
|
public |
NetCDF-C - netCDF interface for C
|
2025-08-13 |
|
esme_mvapich_4_0_ucx
|
public |
Earth System Modelling Environment (ESME) - A bundle for scientific computing packages for climate modelling with MPI support.
|
2025-08-13 |
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esme_pnetcdf_mvapich_4_0_ucx
|
public |
PnetCDF - Parallel netCDF
|
2025-08-13 |
|
esme_pio_mvapich_4_0_ucx
|
public |
ParallelIO - High-level parallel I/O library
|
2025-08-13 |
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esme_netcdf-fortran_mvapich_4_0_ucx
|
public |
NetCDF-Fortran - netCDF interface for Fortran
|
2025-08-13 |
|
esme_esmf_mvapich_4_0_ucx
|
public |
ESMF - Earth System Modeling Framework
|
2025-08-13 |
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skani
|
public |
skani is a fast and robust tool for calculating ANI between metagenome assembled genomes and contigs.
|
2025-08-13 |
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distree
|
public |
A tool to calculate distances between phylogenetic trees.
|
2025-08-12 |
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ddprimer
|
public |
Pipeline for designing primers optimized for droplet digital PCR
|
2025-08-12 |
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ddquint
|
public |
Droplet Digital PCR Multiplex Analysis for chromosomal copy number detection
|
2025-08-12 |
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longcalld
|
public |
longcallD: local-haplotagging-based small and structural variant calling
|
2025-08-12 |
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fstic
|
public |
High-performance Rust tool for computing multiple genetic distance metrics (FST, GST, Jost’s D, etc.) from VCFs or allele-frequency tables, with parallel processing and advanced filtering.
|
2025-08-12 |
|
bioconductor-survcomp
|
public |
Performance Assessment and Comparison for Survival Analysis
|
2025-08-12 |
|
pbsim3
|
public |
A simulator for all types of Pacific Biosciences (PacBio) and Oxford Nanopore Technologies (ONT) long reads
|
2025-08-12 |
|
riassigner
|
public |
GC-MS retention index calculation
|
2025-08-12 |
|
virheat
|
public |
Visualize microbial evolution at the SNP level by creating a heatmap from vcf files.
|
2025-08-12 |
|
t-coffee
|
public |
A collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence
|
2025-08-12 |
|
ligand-validation
|
public |
Extract ligand and binding site information from PDB X-ray validation reports
|
2025-08-12 |
|
phylip
|
public |
Package of programs for inferring phylogenies
|
2025-08-12 |
