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r-recetox-aplcms
|
public |
apLCMS is a software which generates a feature table from a batch of LC/MS spectra. A modified fork of the original apLCMS by Tianwei Yu.
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2025-08-14 |
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drhip
|
public |
DRHIP - Data Reduction for HyPhy with Inference Processing
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2025-08-14 |
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assembly_finder
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public |
Snakemake-powered cli pipeline to download genomes with NCBI datasets
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2025-08-14 |
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scirpy
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public |
A Scanpy extension for analyzing single-cell T-cell and B-cell receptor (TCR/BCR) sequencing data.
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2025-08-14 |
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esme_pio_mvapich_4_0_ofi
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public |
ParallelIO - High-level parallel I/O library
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2025-08-14 |
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esme_hdf5_mvapich_4_0_ofi
|
public |
HDF5 - Hierarchical Data Format 5
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2025-08-14 |
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esme_mvapich_4_0_ofi
|
public |
Earth System Modelling Environment (ESME) - A bundle for scientific computing packages for climate modelling with MPI support.
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2025-08-14 |
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esme_esmf_mvapich_4_0_ofi
|
public |
ESMF - Earth System Modeling Framework
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2025-08-14 |
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esme_netcdf-c_mvapich_4_0_ofi
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public |
NetCDF-C - netCDF interface for C
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2025-08-14 |
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commec
|
public |
commec: a free, open-source, globally available tool for DNA sequence screening
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2025-08-14 |
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pybdei
|
public |
Maximum likelihood estimation of Birth-Death Exposed-Infectious (BDEI) epidemiological model parameters from phylogenetic trees.
|
2025-08-14 |
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selene-sdk
|
public |
Framework for developing sequence-level deep learning networks.
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2025-08-14 |
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pytabix
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public |
Fast random access to sorted files compressed with bgzip and indexed by tabix.
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2025-08-14 |
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ntsynt
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public |
Detecting multi-genome synteny blocks using minimizer graph mapping.
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2025-08-14 |
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ucsc-newpythonprog
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public |
Make a skeleton for a new python program.
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2025-08-14 |
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haproh
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public |
Identify runs of homozygosity (hapROH) and contamination (hapCon) in low coverage ancient human DNA data (1240K SNPs) using modern reference panel
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2025-08-14 |
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panoct
|
public |
PanOCT, Pan-genome Ortholog Clustering Tool, is a program for pan-genomic analysis of closely related prokaryotic species or strains
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2025-08-14 |
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pairsnp
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public |
pairsnp calculates pairwise SNP distance matrices from multiple sequence alignment fasta files.
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2025-08-14 |
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tbox-scan
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public |
tbox-scan is for detecting and classifying T-boxes in DNA sequences.
|
2025-08-14 |
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lightassembler
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public |
Lightweight assembly algorithm designed to be executed on a desktop machine. It uses a pair of cache oblivious Bloom filters, one holding a uniform sample of g-spaced sequenced k-mers and the other holding k-mers classified as likely correct, using a simple statistical test.
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2025-08-14 |
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libstatgen
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public |
Useful set of classes for creating statistical genetic programs.
|
2025-08-14 |
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longgf
|
public |
A fast tool to detect gene fusion from long-read RNA-seq data.
|
2025-08-14 |
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checkm-genome
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public |
Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes.
|
2025-08-14 |
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mapping-iterative-assembler
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public |
Consensus calling or `reference assisted assembly`, chiefly of ancient mitochondria.
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2025-08-14 |
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magpurify
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public |
Identify and remove incorrectly binned contigs from metagenome-assembled genomes.
|
2025-08-14 |
