|
checkatlas
|
public |
One liner tool to check the quality of your single-cell atlases.
|
2025-07-26 |
|
peptides
|
public |
Physicochemical properties, indices and descriptors for amino-acid sequences.
|
2025-07-26 |
|
snakemake-storage-plugin-s3
|
public |
A Snakemake storage plugin for S3 API storage (AWS S3, MinIO, etc.)
|
2025-07-26 |
|
snakemake-executor-plugin-cannon
|
public |
A Snakemake executor plugin for submitting jobs to the Cannon cluster at Harvard University.
|
2025-07-26 |
|
viloca
|
public |
VILOCA is a tool to analyse short- and long-read sequencing viral samples. It provides mutation calls and local haplotypes.
|
2025-07-25 |
|
rasusa
|
public |
Randomly subsample sequencing reads or alignments
|
2025-07-25 |
|
bandwagon
|
public |
Simulate DNA band patterns for gel migration experiments
|
2025-07-24 |
|
met4j
|
public |
Met4J is an open-source Java library dedicated to the structural analysis of metabolic networks
|
2025-07-24 |
|
metadmg
|
public |
metaDMG-cpp: fast and efficient method for estimating mutation and damage rates in ancient DNA data.
|
2025-07-24 |
|
echidna
|
public |
Mapping genotype to phenotype through joint probabilistic modeling of single-cell gene expression and chromosomal copy number variation.
|
2025-07-24 |
|
snakemake-interface-logger-plugins
|
public |
This package provides a stable interface for interactions between Snakemake and its logger plugins.
|
2025-07-24 |
|
hmftools-esvee
|
public |
Structural variant caller specialised for breakend-breakpoint calling.
|
2025-07-24 |
|
ska2
|
public |
SKA (Split Kmer Analysis) version 2.
|
2025-07-24 |
|
perl-dbd-sqlite
|
public |
Self Contained RDBMS in a DBI Driver
|
2025-07-24 |
|
snakemake-interface-common
|
public |
Common functions and classes for Snakemake and its plugins.
|
2025-07-24 |
|
gencore
|
public |
Generate consensus reads to reduce sequencing noises and remove duplications
|
2025-07-24 |
|
genform
|
public |
Generation of molecular formulas by high-resolution MS and MS/MS data
|
2025-07-24 |
|
mutscan
|
public |
Detect and visualize target mutations by scanning FastQ files directly.
|
2025-07-24 |
|
rnashapes
|
public |
RNAshape abstraction maps structures to a tree-like domain of shapes, retaining adjacency and nesting of structural features, but disregarding helix lengths. Shape abstraction integrates well with dynamic programming algorithms, and hence it can be applied during structure prediction rather than afterwards. This avoids exponential explosion and can still give us a non-heuristic and complete account of properties of the molecule's folding space.
|
2025-07-24 |
|
perl-perlio-utf8_strict
|
public |
Fast and correct UTF-8 IO.
|
2025-07-24 |
|
genefuse
|
public |
Gene fusion detection and visualization
|
2025-07-24 |
|
bellmans-gapc
|
public |
A language and compiler for algebraic dynamic programming.
|
2025-07-24 |
|
plasann
|
public |
A tool for plasmid annotation and visualization.
|
2025-07-24 |
|
pysam
|
public |
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
|
2025-07-24 |
|
moments
|
public |
Evolutionary inference using SFS and LD statistics.
|
2025-07-24 |
