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Package Name Access Summary Updated
bioconductor-raex10sttranscriptcluster.db public Affymetrix raex10 annotation data (chip raex10sttranscriptcluster) 2024-12-26
bioconductor-rnagilentdesign028282.db public Agilent Chips that use Agilent design number 028282 annotation data (chip RnAgilentDesign028282) assembled using data from public repositories 2024-12-26
bioconductor-ragene11stprobeset.db public Affymetrix ragene11 annotation data (chip ragene11stprobeset) 2024-12-26
r-acidgsea public Parameterized fast gene set enrichment analysis. 2024-12-26
bioconductor-htrat230pm.db public Affymetrix Affymetrix HT_Rat230_PM Array annotation data (chip htrat230pm) 2024-12-26
bioconductor-rat2302.db public Affymetrix Affymetrix Rat230_2 Array annotation data (chip rat2302) 2024-12-26
r-bcbiosinglecell public R package for bcbio single-cell RNA-seq analysis. 2024-12-26
bioconductor-r10kcod.db public Codelink UniSet Rat I Bioarray (~10 000 rat gene targets) annotation data (chip r10kcod) assembled using data from public repositories 2024-12-26
r-deseqanalysis public Toolkit for performing differential expression with DESeq2. 2024-12-26
bioconductor-ri16cod.db public Codelink Rat Inflammation 16 Bioarray annotation data (chip ri16cod) assembled using data from public repositories 2024-12-26
bioconductor-ragene21stprobeset.db public Affymetrix ragene21 annotation data (chip ragene21stprobeset) 2024-12-26
r-basejump public Base functions for bioinformatics and R package development. 2024-12-26
bioconductor-ragene20sttranscriptcluster.db public Affymetrix ragene20 annotation data (chip ragene20sttranscriptcluster) 2024-12-26
r-acidplots public Functions for plotting genomic data. 2024-12-26
bioconductor-rgug4105a.db public Agilent annotation data (chip rgug4105a) assembled using data from public repositories 2024-12-26
bioconductor-zebrafish.db public Affymetrix Affymetrix Zebrafish Array annotation data (chip zebrafish) 2024-12-26
bioconductor-porcine.db public Affymetrix Affymetrix Porcine Array annotation data (chip porcine) 2024-12-26
bioconductor-xlaevis.db public Affymetrix Xenopus laevis annotation data (chip xlaevis) assembled using data from public repositories 2024-12-26
bioconductor-chicken.db public Affymetrix Affymetrix Chicken Array annotation data (chip chicken) 2024-12-26
bioconductor-ecolileucine public Experimental data with Affymetrix E. coli chips 2024-12-26
bioconductor-indac.db public INDAC FlyChip_long_oligonucleotide_002 (FL002) annotation data (chip indac) assembled using data from public repositories 2024-12-26
r-chromium public Toolkit for 10X Genomics Chromium single cell data. 2024-12-26
bioconductor-drosgenome1.db public Affymetrix Affymetrix DrosGenome1 Array annotation data (chip drosgenome1) 2024-12-26
bioconductor-drosophila2.db public Affymetrix Affymetrix Drosophila_2 Array annotation data (chip drosophila2) 2024-12-26
bioconductor-epivizrchart public R interface to epiviz web components 2024-12-26
bioconductor-celegans.db public Affymetrix Affymetrix Celegans Array annotation data (chip celegans) 2024-12-26
bioconductor-scruff public Single Cell RNA-Seq UMI Filtering Facilitator (scruff) 2024-12-26
bioconductor-gghumanmethcancerpanelv1.db public Illumina Golden Gate Human Methylation Cancer Panel Version 1 annotation data (chip GGHumanMethCancerPanelv1) assembled using data from public repositories 2024-12-26
bioconductor-cafe public Chromosmal Aberrations Finder in Expression data 2024-12-26
bioconductor-canine.db public Affymetrix Affymetrix Canine Array annotation data (chip canine) 2024-12-26
bioconductor-canine2.db public Affymetrix Affymetrix Canine_2 Array annotation data (chip canine2) 2024-12-26
bioconductor-genomicozone public Delineate outstanding genomic zones of differential gene activity 2024-12-26
bioconductor-liquidassociation public LiquidAssociation 2024-12-26
bioconductor-apcomplex public Estimate protein complex membership using AP-MS protein data 2024-12-26
bioconductor-msgbsr public msgbsR: methylation sensitive genotyping by sequencing (MS-GBS) R functions 2024-12-26
bioconductor-yeast2.db public Affymetrix Affymetrix Yeast_2 Array annotation data (chip yeast2) 2024-12-26
bioconductor-r3cpet public 3CPET: Finding Co-factor Complexes in Chia-PET experiment using a Hierarchical Dirichlet Process 2024-12-26
bioconductor-ygs98.db public Affymetrix Affymetrix YG_S98 Array annotation data (chip ygs98) 2024-12-26
bioconductor-esetvis public Visualizations of expressionSet Bioconductor object 2024-12-26
bioconductor-xhybcasneuf public EBI/PSB cross-hybridisation study package 2024-12-26
bioconductor-somaticsignatures public Somatic Signatures 2024-12-26
bioconductor-bovine.db public Affymetrix Affymetrix Bovine Array annotation data (chip bovine) 2024-12-26
bioconductor-u133x3p.db public Affymetrix Human X3P Array annotation data (chip u133x3p) assembled using data from public repositories 2024-12-26
bioconductor-riboprofiling public Ribosome Profiling Data Analysis: from BAM to Data Representation and Interpretation 2024-12-26
bioconductor-hgug4112a.db public Agilent "Human Genome, Whole" annotation data (chip hgug4112a) assembled using data from public repositories 2024-12-26
bioconductor-intansv public Integrative analysis of structural variations 2024-12-26
bioconductor-hu35ksubd.db public Affymetrix Affymetrix Hu35KsubD Array annotation data (chip hu35ksubd) 2024-12-26
bioconductor-hu35ksuba.db public Affymetrix Affymetrix Hu35KsubA Array annotation data (chip hu35ksuba) 2024-12-26
r-ggcoverage public The goal of 'ggcoverage' is to simplify the process of visualizing genome coverage. It contains functions to load data from BAM, BigWig or BedGraph files, create genome coverage plot, add various annotations to the coverage plot, including base and amino acid annotation, GC annotation, gene annotation, transcript annotation, ideogram annotation and peak annotation. 2024-12-26
bioconductor-hugene10stprobeset.db public Affymetrix hugene10 annotation data (chip hugene10stprobeset) 2024-12-26
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