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bioconda / packages

Package Name Access Summary Updated
perl-io-compress public IO Interface to compressed data files/buffers 2025-03-14
sylph public sylph quickly enables querying of genomes against even low-coverage shotgun metagenomes to find nearest neighbour ANI. 2025-03-14
metafun public Custom package for metafun workflow management 2025-03-14
polap public POLAP: plant organelle long-read assembly pipeline 2025-03-14
iseq public iSeq is a Bash script that allows you to download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases. 2025-03-14
genomic_address_service public Genomic Address Service: De novo clustering and cluster address assignment 2025-03-14
bioconda-repodata-patches public generate tweaks to index metadata, hosted separately from anaconda.org index 2025-03-14
strainr2 public StrainR2 accurately deconvolutes strain-level abundances in synthetic microbial communities using metagenomic sequencing reads 2025-03-13
bioconductor-rqc public Quality Control Tool for High-Throughput Sequencing Data 2025-03-13
r-xcell public Estimate immune cell proportions from gene expression data 2025-03-13
bioconductor-gsva public Gene Set Variation Analysis for Microarray and RNA-Seq Data 2025-03-13
perl-data-dump public Pretty printing of data structures 2025-03-13
mmft public Max's minimal fasta toolkit 2025-03-13
percolator public Semi-supervised learning for peptide identification from shotgun proteomics datasets. 2025-03-13
xsd public No Summary 2025-03-13
rabbitsketch public RabbitSketch is a highly optimized sketching library that exploits the power of modern multi-core CPUs. 2025-03-13
snakemake-executor-plugin-slurm public A Snakemake executor plugin for submitting jobs to a SLURM cluster. 2025-03-13
treesimulator public Simulation of rooted phylogenetic trees under a given Multitype Birth–Death (MTBD) model. 2025-03-13
nrpys public Python language bindings for nrps-rs substrate specificity predictor. 2025-03-13
quantms-utils public Python package with scripts and helpers for the quantms workflow. 2025-03-13
rnanorm public Common RNA-seq normalization methods 2025-03-13
hippunfold public This tool aims to automatically model the topological folding structure of the human hippocampus, and computationally unfold it. 2025-03-13
panacus public panacus is a tool for computing counting statistics for GFA files. 2025-03-13
met4j public Met4J is an open-source Java library dedicated to the structural analysis of metabolic networks 2025-03-13
samshee public A schema-agnostic parser and writer for illumina sample sheets v2. 2025-03-13
commec public commec: a free, open-source, globally available tool for DNA sequence screening 2025-03-13
atol-bpa-datamapper public Map data from the BPA data portal for AToL's Genome Engine. 2025-03-13
r-ggbiplot public A biplot based on ggplot2 2025-03-13
python-edlib public Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance. 2025-03-13
r-lncpipereporter public Automatically Aggregating and Summarizing lncRNA Analysis Results for Interactive Report 2025-03-13
sigprofilerplotting public SigProfiler plotting tool. 2025-03-12
miranda public An algorithm for finding genomic targets for microRNAs 2025-03-12
mtm-align public Align multiple protein structures 2025-03-12
locidex public Locidex: Common search engine for similarity based typing applications. 2025-03-12
unikseq public Unique DNA sequence region identification using a k-mer approach 2025-03-12
compleasm public Compleasm: a faster and more accurate reimplementation of BUSCO 2025-03-12
pybiolib public BioLib Python Client 2025-03-12
plek public Predictor of long non-coding RNAs and mRNAs based on k-mer scheme. 2025-03-12
snakemake-interface-storage-plugins public This package provides a stable interface for interactions between Snakemake and its storage plugins. 2025-03-12
seqkit public a cross-platform and ultrafast toolkit for FASTA/Q file manipulation 2025-03-12
taxonkit public A Cross-platform and Efficient NCBI Taxonomy Toolkit 2025-03-12
caspeak public A pipeline for finding non-reference mobile element insertions 2025-03-12
perl-list-moreutils-xs public Provide the stuff missing in List::Util in XS 2025-03-12
namfinder public Finds Non-overlapping Approximate Matches (NAMs) between query and reference sequences using strobemers 2025-03-12
magneto public MAGNETO is an automated snakemake workflow dedicated to MAG reconstruction from metagenomic data. 2025-03-12
snakemake-storage-plugin-s3 public A Snakemake storage plugin for S3 API storage (AWS S3, MinIO, etc.) 2025-03-12
snakemake-storage-plugin-gcs public A Snakemake storage plugin for Google Cloud Storage 2025-03-12
pvga public PVGA is a powerful virus-focused assembler that does both assembly and polishing. 2025-03-12
latch public The Latch python bioinformatics framework 2025-03-12
snakebids public BIDS integration into snakemake workflows 2025-03-12

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