|
perl-io-compress
|
public |
IO Interface to compressed data files/buffers
|
2025-03-14 |
|
sylph
|
public |
sylph quickly enables querying of genomes against even low-coverage shotgun metagenomes to find nearest neighbour ANI.
|
2025-03-14 |
|
metafun
|
public |
Custom package for metafun workflow management
|
2025-03-14 |
|
polap
|
public |
POLAP: plant organelle long-read assembly pipeline
|
2025-03-14 |
|
iseq
|
public |
iSeq is a Bash script that allows you to download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.
|
2025-03-14 |
|
genomic_address_service
|
public |
Genomic Address Service: De novo clustering and cluster address assignment
|
2025-03-14 |
|
bioconda-repodata-patches
|
public |
generate tweaks to index metadata, hosted separately from anaconda.org index
|
2025-03-14 |
|
strainr2
|
public |
StrainR2 accurately deconvolutes strain-level abundances in synthetic microbial communities using metagenomic sequencing reads
|
2025-03-13 |
|
bioconductor-rqc
|
public |
Quality Control Tool for High-Throughput Sequencing Data
|
2025-03-13 |
|
r-xcell
|
public |
Estimate immune cell proportions from gene expression data
|
2025-03-13 |
|
bioconductor-gsva
|
public |
Gene Set Variation Analysis for Microarray and RNA-Seq Data
|
2025-03-13 |
|
perl-data-dump
|
public |
Pretty printing of data structures
|
2025-03-13 |
|
mmft
|
public |
Max's minimal fasta toolkit
|
2025-03-13 |
|
percolator
|
public |
Semi-supervised learning for peptide identification from shotgun proteomics datasets.
|
2025-03-13 |
|
xsd
|
public |
No Summary
|
2025-03-13 |
|
rabbitsketch
|
public |
RabbitSketch is a highly optimized sketching library that exploits the power of modern multi-core CPUs.
|
2025-03-13 |
|
snakemake-executor-plugin-slurm
|
public |
A Snakemake executor plugin for submitting jobs to a SLURM cluster.
|
2025-03-13 |
|
treesimulator
|
public |
Simulation of rooted phylogenetic trees under a given Multitype Birth–Death (MTBD) model.
|
2025-03-13 |
|
nrpys
|
public |
Python language bindings for nrps-rs substrate specificity predictor.
|
2025-03-13 |
|
quantms-utils
|
public |
Python package with scripts and helpers for the quantms workflow.
|
2025-03-13 |
|
rnanorm
|
public |
Common RNA-seq normalization methods
|
2025-03-13 |
|
hippunfold
|
public |
This tool aims to automatically model the topological folding
structure of the human hippocampus, and computationally unfold it.
|
2025-03-13 |
|
panacus
|
public |
panacus is a tool for computing counting statistics for GFA files.
|
2025-03-13 |
|
met4j
|
public |
Met4J is an open-source Java library dedicated to the structural analysis of metabolic networks
|
2025-03-13 |
|
samshee
|
public |
A schema-agnostic parser and writer for illumina sample sheets v2.
|
2025-03-13 |
|
commec
|
public |
commec: a free, open-source, globally available tool for DNA sequence screening
|
2025-03-13 |
|
atol-bpa-datamapper
|
public |
Map data from the BPA data portal for AToL's Genome Engine.
|
2025-03-13 |
|
r-ggbiplot
|
public |
A biplot based on ggplot2
|
2025-03-13 |
|
python-edlib
|
public |
Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.
|
2025-03-13 |
|
r-lncpipereporter
|
public |
Automatically Aggregating and Summarizing lncRNA Analysis Results for Interactive Report
|
2025-03-13 |
|
sigprofilerplotting
|
public |
SigProfiler plotting tool.
|
2025-03-12 |
|
miranda
|
public |
An algorithm for finding genomic targets for microRNAs
|
2025-03-12 |
|
mtm-align
|
public |
Align multiple protein structures
|
2025-03-12 |
|
locidex
|
public |
Locidex: Common search engine for similarity based typing applications.
|
2025-03-12 |
|
unikseq
|
public |
Unique DNA sequence region identification using a k-mer approach
|
2025-03-12 |
|
compleasm
|
public |
Compleasm: a faster and more accurate reimplementation of BUSCO
|
2025-03-12 |
|
pybiolib
|
public |
BioLib Python Client
|
2025-03-12 |
|
plek
|
public |
Predictor of long non-coding RNAs and mRNAs based on k-mer scheme.
|
2025-03-12 |
|
snakemake-interface-storage-plugins
|
public |
This package provides a stable interface for interactions between Snakemake and its storage plugins.
|
2025-03-12 |
|
seqkit
|
public |
a cross-platform and ultrafast toolkit for FASTA/Q file manipulation
|
2025-03-12 |
|
taxonkit
|
public |
A Cross-platform and Efficient NCBI Taxonomy Toolkit
|
2025-03-12 |
|
caspeak
|
public |
A pipeline for finding non-reference mobile element insertions
|
2025-03-12 |
|
perl-list-moreutils-xs
|
public |
Provide the stuff missing in List::Util in XS
|
2025-03-12 |
|
namfinder
|
public |
Finds Non-overlapping Approximate Matches (NAMs) between query and reference sequences using strobemers
|
2025-03-12 |
|
magneto
|
public |
MAGNETO is an automated snakemake workflow dedicated to MAG reconstruction from metagenomic data.
|
2025-03-12 |
|
snakemake-storage-plugin-s3
|
public |
A Snakemake storage plugin for S3 API storage (AWS S3, MinIO, etc.)
|
2025-03-12 |
|
snakemake-storage-plugin-gcs
|
public |
A Snakemake storage plugin for Google Cloud Storage
|
2025-03-12 |
|
pvga
|
public |
PVGA is a powerful virus-focused assembler that does both assembly and polishing.
|
2025-03-12 |
|
latch
|
public |
The Latch python bioinformatics framework
|
2025-03-12 |
|
snakebids
|
public |
BIDS integration into snakemake workflows
|
2025-03-12 |
