| Package Name | Access | Summary | Updated |
|---|---|---|---|
| moni | public | A Pangenomics Index for Finding MEMs | 2025-04-22 |
| mview | public | MView extracts and reformats the results of a sequence database search or multiple alignment. | 2025-04-22 |
| hsdecipher | public | Pipeline for the downstream analysis of highly similar duplicate genes | 2025-04-22 |
| hsdfinder | public | a tool to predict highly similar duplicates (HSDs) in eukaryotes | 2025-04-22 |
| msisensor-rna | public | MSIsensor-RNA: Microsatellite instability detection using RNA sequencing data. | 2025-04-22 |
| busco_phylogenomics | public | Utility script to construct species phylogenies using BUSCO proteins. | 2025-04-22 |
| scarches | public | Transfer learning with Architecture Surgery on Single-cell data | 2025-04-22 |
| seq-hasher | public | Compute hash digests for DNA sequences in a FASTA file, with support for circular permutations | 2025-04-22 |
| tr-trimmer | public | Identify and trim terminal repeats from sequences in FASTA files | 2025-04-22 |
| hylight | public | Strain aware assembly of low coverage metagenomes. | 2025-04-22 |
| transanno | public | accurate VCF/GFF3/GTF LiftOver tool for new genome assemblies | 2025-04-22 |
| hackgap | public | hackgap (hash-based counting of k-mers with gaps) provides a fast jit-compiled k-kmer counter which supports gapped k-mers. | 2025-04-22 |
| dockq | public | A Quality Measure for Protein, Nucleic Acids and Small Ligand Docking Modelsc | 2025-04-22 |
| maxit | public | MAXIT assists in the processing and curation of macromolecular structure data. | 2025-04-22 |
| usalign | public | Universal structure alignment of monomeric, complex proteins and nucleic acids | 2025-04-22 |
| sam2pairwise | public | sam2pairwise takes a SAM file and uses the CIGAR and MD tag to reconstruct the pairwise alignment of each read | 2025-04-22 |
| schpl | public | Hierarchical progressive learning pipeline for single-cell RNA-sequencing datasets | 2025-04-22 |
| strainy | public | Assembly-based metagenomic strain phasing using long reads | 2025-04-22 |
| piawka | public | The powerful AWK script to calculate population statistics in VCF files with support for varying ploidy and missing data | 2025-04-22 |
| starcatpy | public | Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs. | 2025-04-22 |
| poplddecay | public | PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format (VCF) files. | 2025-04-22 |
| kegalign-full | public | KegAlign: A Scalable GPU-Based Whole Genome Aligner | 2025-04-22 |
| cnmf | public | Consensus NMF for scRNA-Seq data. | 2025-04-22 |
| r-cobrar | public | COnstraint-based Reconstruction and Analysis (COBRA) of metabolic networks in R | 2025-04-22 |
| pango-collapse | public | Collapse Pango sublineages up to user defined parent lineages. | 2025-04-22 |
