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mykrobe
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public |
Antibiotic resistance prediction in minutes
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2025-06-10 |
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td2
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public |
TD2: a tool to find protein coding regions in transcripts.
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2025-06-09 |
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whatshap
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public |
Phase genomic variants using DNA sequencing reads (haplotype assembly).
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2025-06-09 |
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pyvcf3
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public |
A Variant Call Format reader for Python.
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2025-06-09 |
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r-mspbwt
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public |
Multi Symbol Positional Burrows Wheeler Transform
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2025-06-09 |
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beem-bio
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public |
Conversion of PDBx/mmCIF files to best effort/minimal PDB files.
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2025-06-09 |
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somaticseq
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public |
An ensemble approach to accurately detect somatic mutations.
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2025-06-09 |
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miniprot-boundary-scorer
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public |
Miniprot boundary scorer parses introns, starts, stops and exons from miniprot's alignment output and scores them.
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2025-06-08 |
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fastqtk
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public |
fastqtk is a fast and lightweight tool for interleaving/deinterleaving/counting/trimming FASTQ files.
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2025-06-08 |
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fastreer
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public |
Phylogenetic, distance, and tree-building utilities for VCF and FASTA files.
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2025-06-08 |
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r-diffcorr
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public |
A method for identifying pattern changes between 2 experimental conditions in correlation networks (e.g., gene co-expression networks), which builds on a commonly used association measure, such as Pearson's correlation coefficient. This package includes functions to calculate correlation matrices for high-dimensional dataset and to test differential correlation, which means the changes in the correlation relationship among variables (e.g., genes and metabolites) between 2 experimental conditions.
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2025-06-08 |
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phyloaln
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public |
PhyloAln: a reference-based multiple sequence alignment tool for phylogeny
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2025-06-08 |
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annosine2
|
public |
AnnoSINE_v2 - SINE Annotation Tool for Plant and Animal Genomes.
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2025-06-08 |
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uniqsketch
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public |
UniqSketch: sensitive and resource-efficient strain-level detection in metagenomes.
|
2025-06-08 |
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paragone
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public |
Identify ortholog groups from a set of paralog sequences from multiple taxa.
|
2025-06-07 |
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r-monocle3
|
public |
An analysis toolkit for single-cell RNA-seq.
|
2025-06-07 |
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treeshrink
|
public |
an algorithm for detecting (and removing) abnormally long branches in one or more phylogenetic trees
|
2025-06-07 |
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mothur
|
public |
This project seeks to develop a single piece of open-source, expandable software to fill the bioinformatics needs of the microbial ecology community.
|
2025-06-06 |
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viral_consensus
|
public |
Fast viral consensus genome reconstruction.
|
2025-06-06 |
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marbel
|
public |
Marbel generates realistic in silico metatranscriptomic dataset based on specified parameters.
|
2025-06-06 |
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bcalm
|
public |
BCALM 2 is a bioinformatics tool for constructing the compacted de Bruijn graph from sequencing data.
|
2025-06-06 |
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gfatools
|
public |
Tools for manipulating sequence graphs in the GFA and rGFA formats.
|
2025-06-06 |
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flexidot
|
public |
Flexible dotplotting of genomic sequences.
|
2025-06-06 |
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bcftools-gtc2vcf-plugin
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public |
Tools to convert Illumina and Affymetrix array intensity data files into VCF files.
|
2025-06-06 |
|
hmftools-bwa-plus
|
public |
bwa-mem with extensions for WiGiTS
|
2025-06-06 |
