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bioconductor-cghcall
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public |
Calling aberrations for array CGH tumor profiles.
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2024-12-19 |
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bioconductor-cycle
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public |
Significance of periodic expression pattern in time-series data
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2024-12-19 |
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bioconductor-flowclean
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public |
flowClean
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2024-12-18 |
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bioconductor-mspurity
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public |
Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics
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2024-12-18 |
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bioconductor-simat
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public |
GC-SIM-MS data processing and alaysis tool
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2024-12-18 |
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bioconductor-flowmeans
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public |
Non-parametric Flow Cytometry Data Gating
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2024-12-18 |
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bioconductor-chimphumanbraindata
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public |
Chimp and human brain data package
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2024-12-18 |
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bioconductor-consensusclusterplus
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public |
ConsensusClusterPlus
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2024-12-18 |
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disco
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public |
Multi-threaded Distributed Memory Overlap-Layout-Consensus (OLC) Metagenome Assembler
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2024-12-18 |
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bioconductor-diggitdata
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public |
Example data for the diggit package
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2024-12-18 |
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arcs
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public |
Scaffolding genome sequence assemblies using linked or long reads
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2024-12-18 |
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bioconductor-vsn
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public |
Variance stabilization and calibration for microarray data
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2024-12-18 |
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bioconductor-tronco
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public |
TRONCO, an R package for TRanslational ONCOlogy
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2024-12-18 |
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bioconductor-dorothea
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public |
Collection Of Human And Mouse TF Regulons
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2024-12-18 |
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bioconductor-flowbeads
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public |
flowBeads: Analysis of flow bead data
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2024-12-18 |
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bioconductor-rcellminer
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public |
rcellminer: Molecular Profiles, Drug Response, and Chemical Structures for the NCI-60 Cell Lines
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2024-12-18 |
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anchorwave
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public |
Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism, and whole-genome duplication variation
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2024-12-18 |
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r-mspbwt
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public |
Multi Symbol Positional Burrows Wheeler Transform
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2024-12-18 |
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r-diffcorr
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public |
A method for identifying pattern changes between 2 experimental conditions in correlation networks (e.g., gene co-expression networks), which builds on a commonly used association measure, such as Pearson's correlation coefficient. This package includes functions to calculate correlation matrices for high-dimensional dataset and to test differential correlation, which means the changes in the correlation relationship among variables (e.g., genes and metabolites) between 2 experimental conditions.
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2024-12-18 |
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bioconductor-cll
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public |
A Package for CLL Gene Expression Data
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2024-12-18 |
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bioconductor-rcwl
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public |
An R interface to the Common Workflow Language
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2024-12-18 |
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bioconductor-metabomxtr
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public |
A package to run mixture models for truncated metabolomics data with normal or lognormal distributions
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2024-12-18 |
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r-tidygenomics
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public |
Handle genomic data within data frames just as you would with 'GRanges'. This packages provides method to deal with genomic intervals the "tidy-way" which makes it simpler to integrate in the the general data munging process. The API is inspired by the popular 'bedtools' and the genome_join() method from the 'fuzzyjoin' package.
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2024-12-18 |
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insurveyor
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public |
An insertion caller for Illumina paired-end WGS data.
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2024-12-18 |
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r-velocyto.r
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public |
RNA velocity estimation in R
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2024-12-18 |
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bioconductor-dirichletmultinomial
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public |
Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data
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2024-12-18 |
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bioconductor-rebook
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public |
Re-using Content in Bioconductor Books
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2024-12-18 |
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bioconductor-metaseq
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public |
Meta-analysis of RNA-Seq count data in multiple studies
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2024-12-18 |
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r-crmn
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public |
Implements the Cross-contribution Compensating Multiple standard Normalization (CCMN) method described in Redestig et al. (2009) Analytical Chemistry <doi:10.1021/ac901143w> and other normalization algorithms.
|
2024-12-18 |
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bioconductor-flowspecs
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public |
Tools for processing of high-dimensional cytometry data
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2024-12-18 |
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ntstat
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public |
a toolkit for statistical analysis of k-mer frequency and depth
|
2024-12-18 |
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bioconductor-ampaffyexample
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public |
Example of Amplified Data
|
2024-12-18 |
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bioconductor-turbonorm
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public |
A fast scatterplot smoother suitable for microarray normalization
|
2024-12-18 |
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bioconductor-ruvnormalize
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public |
RUV for normalization of expression array data
|
2024-12-18 |
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bioconductor-ruvcorr
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public |
Removal of unwanted variation for gene-gene correlations and related analysis
|
2024-12-18 |
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bioconductor-tmixclust
|
public |
Time Series Clustering of Gene Expression with Gaussian Mixed-Effects Models and Smoothing Splines
|
2024-12-18 |
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bioconductor-tidyflowcore
|
public |
tidyFlowCore: Bringing flowCore to the tidyverse
|
2024-12-18 |
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bioconductor-gwasdata
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public |
Data used in the examples and vignettes of the GWASTools package
|
2024-12-18 |
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nthits
|
public |
ntHits is a tool for efficiently counting and filtering k-mers based on their frequencies
|
2024-12-18 |
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r-acidplyr
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public |
A grammar of S4 class data manipulation.
|
2024-12-18 |
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bioconductor-complexheatmap
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public |
Make Complex Heatmaps
|
2024-12-18 |
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bioconductor-derfinderhelper
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public |
derfinder helper package
|
2024-12-18 |
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r-perfmeas
|
public |
Package that implements different performance measures for classification and ranking tasks. AUC, precision at a given recall, F-score for single and multiple classes are available.
|
2024-12-18 |
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bioconductor-nethet
|
public |
A bioconductor package for high-dimensional exploration of biological network heterogeneity
|
2024-12-18 |
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bioconductor-flowchic
|
public |
Analyze flow cytometric data using histogram information
|
2024-12-18 |
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r-imputelcmd
|
public |
The package contains a collection of functions for left-censored missing data imputation. Left-censoring is a special case of missing not at random (MNAR) mechanism that generates non-responses in proteomics experiments. The package also contains functions to artificially generate peptide/protein expression data (log-transformed) as random draws from a multivariate Gaussian distribution as well as a function to generate missing data (both randomly and non-randomly). For comparison reasons, the package also contains several wrapper functions for the imputation of non-responses that are missing at random. * New functionality has been added: a hybrid method that allows the imputation of missing values in a more complex scenario where the missing data are both MAR and MNAR.
|
2024-12-18 |
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bioconductor-nucleosim
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public |
Generate synthetic nucleosome maps
|
2024-12-18 |
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prophyle
|
public |
ProPhyle is an accurate, resource-frugal and deterministic phylogeny-based metagenomic classifier.
|
2024-12-18 |
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bioconductor-scde
|
public |
Single Cell Differential Expression
|
2024-12-18 |
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bioconductor-ebcoexpress
|
public |
EBcoexpress for Differential Co-Expression Analysis
|
2024-12-18 |
