|
ucsc-pslpairs
|
public |
Join paired ends in psl alignments.
|
2025-06-26 |
|
ucsc-qactowig
|
public |
Convert from compressed quality score format to wiggle format.
|
2025-06-26 |
|
ucsc-ixixx
|
public |
Create indices for simple line-oriented file of format.
|
2025-06-26 |
|
ucsc-bigwiginfo
|
public |
Print out information about bigWig file.
|
2025-06-26 |
|
ucsc-bigwigtobedgraph
|
public |
Convert from bigWig to bedGraph format.
|
2025-06-26 |
|
ucsc-gff3togenepred
|
public |
Convert a GFF3 file to a genePred file.
|
2025-06-26 |
|
ucsc-pslcheck
|
public |
Validate PSL files.
|
2025-06-25 |
|
ucsc-nibfrag
|
public |
Extract part of a nib file as .fa (all bases/gaps lower case by default).
|
2025-06-25 |
|
pod5
|
public |
Oxford Nanopore Technologies Pod5 File Format Python API and Tools.
|
2025-06-25 |
|
ucsc-bigwigtowig
|
public |
Convert bigWig to wig. This will keep more of the same structure of the original wig than bigWigToBedGraph does, but still will break up large stepped sections into smaller ones.
|
2025-06-25 |
|
celltypist
|
public |
A tool for semi-automatic cell type annotation.
|
2025-06-25 |
|
lib-pod5
|
public |
Python bindings for the POD5 file format.
|
2025-06-25 |
|
poseidon-trident
|
public |
A tool (trident) to work with modular genotype databases formatted using Poseidon.
|
2025-06-25 |
|
crossmap
|
public |
CrossMap is a program for convenient conversion of genome coordinates and genomeannotation files between assemblies.
|
2025-06-25 |
|
ltr_retriever
|
public |
Sensitive and accurate identification of LTR retrotransposons
|
2025-06-25 |
|
voronota
|
public |
Compute Voronoi diagram vertices for macromolecular structures
|
2025-06-25 |
|
eklipse
|
public |
eKLIPse is a sensitive and specific tool allowing the detection and quantification of large mtDNA rearrangements.
|
2025-06-25 |
|
dendropy
|
public |
A Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, processing and manipulation of phylogenetic trees (phylogenies) and characters.
|
2025-06-25 |
|
beav
|
public |
beav: Bacterial genome and mobile element annotation pipeline
|
2025-06-25 |
|
demultiplex
|
public |
Demultiplex any number of FASTA or a FASTQ files based on a list of barcodes
|
2025-06-25 |
|
shortcut
|
public |
ShortCut Small RNA-seq data trimmer and quality control tool
|
2025-06-25 |
|
lepwrap
|
public |
The Snakemake pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring+orienting genome assemblies.
|
2025-06-25 |
|
mi-pimento
|
public |
A PrIMEr infereNce TOolkit to facilitate large-scale calling of metabarcoding amplicon sequence variants.
|
2025-06-25 |
|
pybascule
|
public |
Bayesian NMF signatures deconvolution and DP clustering.
|
2025-06-25 |
|
strainr2
|
public |
StrainR2 accurately deconvolutes strain-level abundances in synthetic microbial communities using metagenomic sequencing reads
|
2025-06-25 |
