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nanomotif
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public |
Identifying methlyation motifs in nanopore data
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2025-04-15 |
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quantms-rescoring
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public |
PSM rescoring python package with scripts and helpers for the quantms workflow
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2025-04-15 |
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bioconductor-deseq2
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public |
Differential gene expression analysis based on the negative binomial distribution
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2025-04-15 |
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wally
|
public |
Visualization of aligned sequencing reads and genomic variants.
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2025-04-15 |
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bioconductor-rtracklayer
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public |
R interface to genome annotation files and the UCSC genome browser
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2025-04-15 |
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bioconductor-genomicalignments
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public |
Representation and manipulation of short genomic alignments
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2025-04-15 |
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r-restfulr
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public |
Models a RESTful service as if it were a nested R list.
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2025-04-15 |
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pasta
|
public |
An implementation of the PASTA (Practical Alignment using Sate and TrAnsitivity) algorithm
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2025-04-15 |
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genmod
|
public |
Annotate genetic inheritance models in variant files
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2025-04-15 |
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r-bpcells
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public |
Efficient operations for single cell ATAC-seq fragments and RNA counts matrices. Interoperable with standard file formats, and introduces efficient bit-packed formats that allow large storage savings and increased read speeds.
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2025-04-15 |
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dnachisel
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public |
Optimize DNA sequences under constraints.
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2025-04-15 |
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rmblast
|
public |
RMBlast is a RepeatMasker compatible version of the standard NCBI BLAST+ suite.
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2025-04-15 |
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kmer2stats
|
public |
A tool for creating data files for statistic based on kmers.
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2025-04-15 |
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mysterymaster
|
public |
Graphical Oxford Nanopore read demultiplexer
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2025-04-15 |
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bakrep-cli
|
public |
BakRep-CLI: a commandline tool for the batch download of BakRep datasets
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2025-04-15 |
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mpboot
|
public |
Fast phylogenetic maximum parsimony tree inference and bootstrap approximation.
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2025-04-15 |
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vamb
|
public |
Variational autoencoder for metagenomic binning.
|
2025-04-15 |
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cleanifier
|
public |
A fast lightweight tool to remove contamination using k-mers.
|
2025-04-15 |
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bbmapy
|
public |
A Python wrapper for BBTools.
|
2025-04-15 |
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vambcore
|
public |
Performant backend functions for the Vamb binning tool
|
2025-04-14 |
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drep
|
public |
De-replication of microbial genomes assembled from multiple samples.
|
2025-04-14 |
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deepdetails
|
public |
Deep-learning-based DEconvolution of Tissue profiles with Accurate Interpretation of Locus-specific Signals (DeepDETAILS)
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2025-04-14 |
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fast2q
|
public |
A Python3 program that counts sequence occurrences in FASTQ files.
|
2025-04-14 |
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qcatch
|
public |
QCatch: Quality Control downstream of alevin-fry / simpleaf.
|
2025-04-14 |
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bioconductor-s4arrays
|
public |
Foundation of array-like containers in Bioconductor
|
2025-04-14 |
|
bioconductor-sparsearray
|
public |
High-performance sparse data representation and manipulation in R
|
2025-04-14 |
|
sr2silo
|
public |
Short-read to SILO format converter.
|
2025-04-14 |
|
ogtfinder
|
public |
OGTFinder is an optimal growth temperature prediction tool for prokaryotes using proteome-derived features.
|
2025-04-14 |
|
arvados-python-client
|
public |
Python API for Arvados
|
2025-04-14 |
|
ebi-eva-common-pyutils
|
public |
EBI EVA - Common Python Utilities.
|
2025-04-14 |
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sniffles
|
public |
Sniffles is a structural variation caller using third generation sequencing (PacBio or Oxford Nanopore).
|
2025-04-14 |
|
bioconductor-gosemsim
|
public |
GO-terms Semantic Similarity Measures
|
2025-04-14 |
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pggb
|
public |
PanGenome Graph Building pipeline renders
|
2025-04-14 |
|
wfmash
|
public |
a pangenome-scale aligner
|
2025-04-14 |
|
methylartist
|
public |
Tools for parsing and plotting nanopore methylation data.
|
2025-04-14 |
|
bioconductor-rhtslib
|
public |
HTSlib high-throughput sequencing library as an R package
|
2025-04-14 |
|
bioconductor-rsamtools
|
public |
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
|
2025-04-14 |
|
ppanggolin
|
public |
PPanGGOLiN: Depicting microbial species diversity via a Partitioned PanGenome Graph
|
2025-04-14 |
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ltr_harvest_parallel
|
public |
Perl wrapper for parallel execution of LTR_harvest
|
2025-04-14 |
|
checkqc
|
public |
A simple program to parse Illumina NGS data and check it for quality criteria.
|
2025-04-14 |
|
libcifpp
|
public |
Library containing code to manipulate mmCIF and PDB files.
|
2025-04-14 |
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carveme
|
public |
CarveMe: automated genome-scale metabolic model reconstruction
|
2025-04-14 |
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gsearch
|
public |
gsearch is an ultra-fast and scalable microbial genome search program based on MinHash-like metrics and graph-based approximate nearest neighbor search
|
2025-04-14 |
|
teloscope
|
public |
A telomere annotation tools for genome assemblies.
|
2025-04-14 |
|
cogent3
|
public |
COmparative GENomics Toolkit 3: genomic sequence analysis within notebooks or on compute systems with 1000s of CPUs.
|
2025-04-14 |
|
gapmm2
|
public |
gapmm2: gapped alignment using minimap2.
|
2025-04-14 |
|
sawfish
|
public |
Structural variant discovery and genotyping from mapped PacBio HiFi data
|
2025-04-14 |
|
mach2
|
public |
Migration Analysis of Clonal Histories 2
|
2025-04-14 |
|
xtandem
|
public |
No Summary
|
2025-04-14 |
|
mypmfs_py
|
public |
Python package for mypmfs training (includes batch download from PDB).
|
2025-04-14 |
