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lorax
|
public |
A long-read analysis toolbox for cancer genomics
|
2025-07-02 |
|
nextstrain-cli
|
public |
The Nextstrain command-line interface (CLI).
|
2025-07-02 |
|
replidec
|
public |
Replication Cycle Decipher for Phages.
|
2025-07-02 |
|
fragpipe
|
public |
Pipeline for comprehensive analysis of shotgun proteomics data
|
2025-07-02 |
|
hybpiper
|
public |
HybPiper is a suite of Python scripts/modules for targeted sequence capture.
|
2025-07-02 |
|
ucsc-overlapselect
|
public |
Select records based on overlapping chromosome ranges.
|
2025-07-02 |
|
wakhan
|
public |
A tool to analyze haplotype-specific chromosome-scale somatic copy number aberrations and aneuploidy using long reads
|
2025-07-02 |
|
nextflow
|
public |
A DSL for data-driven computational pipelines http://nextflow.io
|
2025-07-02 |
|
qcatch
|
public |
QCatch: Quality Control downstream of alevin-fry / simpleaf.
|
2025-07-02 |
|
mpralib
|
public |
Library to analyze count data of MPRA experiments.
|
2025-07-01 |
|
ezomero
|
public |
A module with convenience functions for writing Python code that interacts with OMERO.
|
2025-07-01 |
|
faststructure
|
public |
A variational framework for inferring population structure from SNP genotype data.
|
2025-07-01 |
|
r-exomedepth
|
public |
Calls copy number variants (CNVs) from targeted sequence data, typically exome sequencing experiments designed to identify the genetic basis of Mendelian disorders.
|
2025-06-30 |
|
ucsc-facount
|
public |
Count base statistics and CpGs in FA files.
|
2025-06-30 |
|
ucsc-headrest
|
public |
Return all *but* the first N lines of a file.
|
2025-06-30 |
|
ucsc-mafcoverage
|
public |
Analyse coverage by maf files - chromosome by.
|
2025-06-30 |
|
ucsc-ldhggene
|
public |
Load database with gene predictions from a gff file.
|
2025-06-30 |
|
ucsc-splitfile
|
public |
Split up a file.
|
2025-06-30 |
|
ucsc-hubcheck
|
public |
Check a track data hub for integrity.
|
2025-06-30 |
|
ucsc-mafsplit
|
public |
Split multiple alignment files.
|
2025-06-30 |
|
ucsc-catdir
|
public |
Concatenate files in directory to stdout.
|
2025-06-30 |
|
ucsc-newprog
|
public |
Make a new C source skeleton.
|
2025-06-30 |
|
ucsc-featurebits
|
public |
Correlate tables via bitmap projections.
|
2025-06-30 |
|
ucsc-randomlines
|
public |
Pick out random lines from file.
|
2025-06-30 |
|
ucsc-subchar
|
public |
Substitute one character for another throughout a file.
|
2025-06-30 |
