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fmsi
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public |
FMSI - memory efficient k-mer set index based on masked superstrings and Burrows-Wheeler transform.
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2025-04-22 |
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r-chromvarmotifs
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public |
Stores several motifs as PWMatrixList objects for use in R with packages like motifmatchr and chromVAR.
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2025-04-22 |
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r-archr
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public |
This package is designed to streamline scATAC analyses in R.
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2025-04-22 |
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longcallr_nn
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public |
longcallR_nn is a variant caller specifically designed for long-read RNA-seq data utilizing a ResNet model.
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2025-04-22 |
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gafpack
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public |
Convert alignments to pangenome variation graphs to coverage maps
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2025-04-22 |
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seqspec
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public |
File format that describes data generated from genomics experiments. File format and seqspec tool enable uniform processing of genomics data.
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2025-04-22 |
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meta_eukaryome_detect
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public |
Pathogen, Parasite, Eukaryote and Virus detection in metagenomes.
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2025-04-22 |
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devider
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public |
Haplotyping small sequences from heterogeneous long-read sequencing samples with a SNP-encoded positional de Bruijn graphs.
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2025-04-22 |
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phabox
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public |
Virus identification and analysis tool set
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2025-04-22 |
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cosigt
|
public |
Cosigt (COsine SImilarity-based GenoTyper)
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2025-04-22 |
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sfold
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public |
Software for Statistical Folding of Nucleic Acids
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2025-04-22 |
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samshee
|
public |
A schema-agnostic parser and writer for illumina sample sheets v2.
|
2025-04-22 |
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gfainject
|
public |
Inject alignment into pangenome graphs
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2025-04-22 |
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pantax
|
public |
Strain-level metagenomic profiling using pangenome graphs with PanTax
|
2025-04-22 |
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sipros
|
public |
Tools for stable isotopic mass spectrometry-based metaproteomics
|
2025-04-22 |
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lz-ani
|
public |
Fast and accurate tool for calculating Average Nucleotide Identity (ANI) among virus and bacteria genomes
|
2025-04-22 |
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patchify
|
public |
A library that helps you split image into small, overlappable patches, and merge patches back into the original image.
|
2025-04-22 |
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hmftools-chord
|
public |
Predict HRD using somatic mutations contexts
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2025-04-22 |
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tefinder
|
public |
Programs for transposable element search and annotation in large eukaryotic genome sequence.
|
2025-04-22 |
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snk
|
public |
A Snakemake CLI and Workflow Management System.
|
2025-04-22 |
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kmercamel
|
public |
KmerCamel🐫 - compressing k-mer sets using masked superstrings.
|
2025-04-22 |
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snk-cli
|
public |
Dynamically generate CLIs from Snakemake configuration files
|
2025-04-22 |
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mutamr
|
public |
Stripped down tool for generation of annotated vcf from paired-end reads in a CPHL.
|
2025-04-22 |
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mini3di
|
public |
A NumPy port of the foldseek code for encoding protein structures to 3di.
|
2025-04-22 |
|
heliano
|
public |
HELIANO: A fast and accurate tool for detection of Helitron-like elements
|
2025-04-22 |
